PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0018s0192.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family SBP
Protein Properties Length: 1244aa    MW: 136070 Da    PI: 6.2049
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0018s0192.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.45.7e-40215292178
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           +Cqv++C+adls+ak+yhrrhkvC++hska+++ v +l+qrfCqqCsrfh l efDe+krsCrrrL++hn+rrrk+q+
  Sphfalx0018s0192.1.p 215 MCQVDNCKADLSKAKDYHRRHKVCDMHSKAANASVMQLMQRFCQQCSRFHPLPEFDEGKRSCRRRLEGHNRRRRKTQT 292
                           6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.8E-33208277IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.462213290IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.07E-36214294IPR004333Transcription factor, SBP-box
PfamPF031106.5E-29216289IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.201.8E-99601109IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.57E-89821109IPR020683Ankyrin repeat-containing domain
SMARTSM002482109891019IPR002110Ankyrin repeat
CDDcd002046.87E-79941109No hitNo description
SMARTSM0024816010501080IPR002110Ankyrin repeat
PROSITE profilePS5029710.41810501110IPR020683Ankyrin repeat-containing domain
SMARTSM0024881010901119IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1244 aa     Download sequence    Send to blast
MEKEMGHVGV DSLSHSSRPF HQHQFFPGGN GKQPILSNRL TIPVEQDNGP WSSSSNRDHS  60
DSQGMENSSQ RKEWDMKAWN WDSVMFVAQP ASWTASGSAN EGTQRHSVDE NGGHRRAPEF  120
TFQLEGSSGA PRQPLLGDGR SESELQSRSF FDRETPSPPQ NSAKSLRVDD TAPEEVGSLG  180
LKLGGSSYPI VEEDGSGSHG VKRTRSSSPQ SQVPMCQVDN CKADLSKAKD YHRRHKVCDM  240
HSKAANASVM QLMQRFCQQC SRFHPLPEFD EGKRSCRRRL EGHNRRRRKT QTDPTARSYL  300
MGDDDLIGRG GAGLVSGLLH ILAQLQASTS LNHANAPIVD REALLRKAVL ASLEDRTTPL  360
WNSLIPNLDS LAAGLVSRQE QVAPSNGHTS DLSIATQQLL SRLAGGSSPE VLALLLQSTG  420
QLPTSLMHVL GSHPLIQERA GLVPLSHASS STPDLLTCPL QREVGHSSFG CASGVPAPTD  480
HRLPVSWELV PKSTDSSLVR PIAERLMPNP ELSALQDDQV LAAPAMQRLF PEQSTADHST  540
VAIGKDARQR ADAGMNSAIG SRGSLMLSSI GAQKTGSSFR PIPPDPRPAL QPSIVQLSNS  600
PQSGSDEELP AHLTPNIEMW KNPTRRILLK LFDRTPEDLP HNLRMQIDAW LEHLPTDMES  660
YIKPGCVVLT IYVSMPHSAW VELDRDLQRS LEKLLNTCSG AFWHKGRILV QVEQQMVLIV  720
DGNIVERKLV DPLSQPYIQS VRPIAIVAGQ ETNISCNGFN LARSGTRLLC VYQGKNLSQS  780
VSNVEDEEAD NASGGADVEV DEVNSYGEEG VEDCAIMVTA DRAIFKVDHT FTFCGECSDV  840
VGRCFIEVEQ NLSGGNSKPV IVANTLVCKE LCKLEEEIEA ATLCAAEMAE REGLESSDIL  900
ICSEVARALV EEDVACFLHE LGWYFQNRSY WQFSDSASLD MVHAFRLKCL LVFSVERDWC  960
TVVQKLLDMP FQRAESDSLF AKLSHVVQDE ISLLHRAVRR KCRPMVELLL AYVPSSLTKE  1020
SDSGLENFQR IMQFKLQWGN FFRPDMAGPA GLTPLHIAAS MQDAEDVVDA LTSDPCQVGL  1080
HAWVSKQDES GQTPLSLALV GGNIKSIQLV RAKLALLESM GGSVAINIPG DSLPHIQDQR  1140
PCEASKSAAP KSLNLELPFS SNQRSASGVK LNTGKARFPC SAFGRQAGNR GGIVNAYIPK  1200
SFLLSLVTIA TICVCVCLLF KDPPFVTFVR PPFRWDSLGS GPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-30207289284squamosa promoter binding protein-like 4
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00664PBMTransfer from Potri.002G002400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.11e-112squamosa promoter binding protein-like 14