PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0018s0181.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | GRF | ||||||||
Protein Properties | Length: 552aa MW: 57804.2 Da PI: 8.3064 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 68.9 | 6.3e-22 | 130 | 171 | 2 | 43 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 epgrCrRtDGKkWRC r+v++++k+CE+H+hrgr+r r+ Sphfalx0018s0181.1.p 130 LEPGRCRRTDGKKWRCGRDVVPDQKYCEKHVHRGRQRPRRNA 171 69***********************************99875 PP | |||||||
2 | QLQ | 38.1 | 4.7e-14 | 56 | 90 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT Q++++ +Q l++Ky++a++ vP+eLl +i+ Sphfalx0018s0181.1.p 56 PFTSGQWAEFAHQDLIFKYMMAGLNVPQELLNPIC 90 9*********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 0.0048 | 55 | 91 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.9E-9 | 56 | 90 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 15.831 | 56 | 91 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.233 | 129 | 173 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.3E-18 | 131 | 169 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MGLYAAAHDW SRVAGSASAS LLCGRGAAAE GMNEMAGSTQ LYQLQHSSLV SGSRAPFTSG 60 QWAEFAHQDL IFKYMMAGLN VPQELLNPIC SRSTGPAGLM NSMTSSCHNA ANLRWGPAIH 120 RSGVQSSTDL EPGRCRRTDG KKWRCGRDVV PDQKYCEKHV HRGRQRPRRN AVELGPHAAA 180 AATGSSPSAT SSSSGAAATA VHVSAGTTNV GPIRTSSTTS GGGTSGSSCF SLSSCLQQQQ 240 HRPSSNLSVK SCFSSSHSSP SPGSGGGSSP AGSSQFGQLP SLTSSPSAVA AASTFASKDY 300 SRYLAASSVM KSDQQQGIGS EQQHSILSSE TLGSTARGQG HETSQMLSNL SRLQSVNQSW 360 HSLLSSKVPA AHHESKVNSN SCSSGLLHFG HSTSSPQLTR GQLLGQDFGL LSDQTGGQVD 420 HVTHSMSAAQ QQAQAYHAVS NASYGSAESV SVQARRESEG QPLRHFFDDW PRSRDRSAMT 480 SWGSGSVDEP DQEHSNSDIN LSTHLATPSI NNTQLSISIP ITAAASSAHE HPGSPTADFW 540 RDHAIRYGVA N* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 7e-30 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0018s0181.1.p |