PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0018s0040.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C3H | ||||||||
Protein Properties | Length: 352aa MW: 40134.6 Da PI: 8.7997 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.7 | 2e-08 | 8 | 33 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+ C+ +++ G+C++ +C+FaHg+ Sphfalx0018s0040.2.p 8 YKTKMCSLYMQRGYCPR-QSCSFAHGE 33 9****************.*******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-14 | 3 | 39 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.71E-7 | 6 | 38 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.103 | 7 | 34 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0031 | 7 | 33 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-5 | 8 | 33 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MPYAPDLYKT KMCSLYMQRG YCPRQSCSFA HGESELRKLP GRYDSGGGDL RRSPTYWRRS 60 PPREEREHNW PHDHRSPQHD RGQTQSKSPA KRRQSDSLSP QRSPEYKRKD SKKHPDSTEP 120 HLSDVSGPID GAEDVADKDN DKDRSRSIST SSEDTVEEQL QEVYSSNETL LDQKAKLEHS 180 LQTKVLKTTE LSEKIAQLET QLASTHNVCK GLASRTKKFV KAYKGFFRAQ EELKKSQTKL 240 MKLVDDMSGD NGPKLDMDME YLDTAITSNE EPMHELPTNN QTNHRLLAEG SHTMPRQENT 300 DIKTSNHLPS TVEQPKLVEN SKQRKLTTAQ ERRRALLQKA LQQGGLFVEQ S* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K1JVH8 | 1e-52 | A0A2K1JVH8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S31_349V6.1 | 2e-53 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 3e-27 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0018s0040.2.p |