PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0018s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | Trihelix | ||||||||
Protein Properties | Length: 362aa MW: 40932 Da PI: 8.3037 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 81.5 | 1.2e-25 | 64 | 143 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++aLi+ r+em++ ++++k++k+lWe++s+km+erg+ r+p++C++kw+nl k+ykk k ++k+ s+++ f++le Sphfalx0018s0006.1.p 64 WVQDEIKALIAYRKEMDSMFNTSKSNKHLWEQISQKMKERGYDRTPTMCTDKWRNLLKEYKKAKVQDKGT-----SKVACFKDLE 143 ****************************************************************999973.....3456788886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-5 | 55 | 126 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.513 | 56 | 120 | IPR017877 | Myb-like domain |
SMART | SM00717 | 9.8E-6 | 60 | 122 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.06E-5 | 60 | 126 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 5.92E-30 | 62 | 127 | No hit | No description |
Pfam | PF13837 | 1.8E-19 | 63 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MFEGESRWRE AVEIDRVQHQ LPSASQQQQQ LATAVHQVLL APAPDATSED HDQIKAPKKR 60 AETWVQDEIK ALIAYRKEMD SMFNTSKSNK HLWEQISQKM KERGYDRTPT MCTDKWRNLL 120 KEYKKAKVQD KGTSKVACFK DLEELLSERA KSLPYRNPAK LDALQQGSAR MLNVERQLDR 180 NGHPTAALPS ADAVGGPPPT FITNGGVPQT WSWRDTNANG GDCQLSGGKV VAVKFGDMTR 240 RIRVDGPFKS INESVKTSFG LRTRRPFWLE DDEGVIQPLS RDMPPGQYSL NLDPGFTVKV 300 CLYDDDGRMT GSTENRTLYT DEDLHEFLSR RGWSGLREVG SFRDFNSLED LRPGAVYQRP 360 P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 8e-37 | 58 | 141 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00141 | DAP | Transfer from AT1G13450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010248872.1 | 1e-123 | PREDICTED: trihelix transcription factor GT-1-like | ||||
Swissprot | Q9FX53 | 1e-109 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A176WHM3 | 1e-146 | A0A176WHM3_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6W1Q4 | 1e-146 | A0A2R6W1Q4_MARPO; Uncharacterized protein | ||||
STRING | XP_010248872.1 | 1e-123 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 1e-110 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0018s0006.1.p |
Publications ? help Back to Top | |||
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