PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0017s0189.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | WOX | ||||||||
Protein Properties | Length: 376aa MW: 41198.3 Da PI: 5.2666 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.2e-19 | 110 | 170 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r R+t+++ ql++Le+lFe+ n +p++++++e++++l ++te++V++WFqNr+a+ k+ Sphfalx0017s0189.1.p 110 RLRWTPSQIQLQTLERLFEQgNGTPNKQHIKEITDELrrhgQITETNVYNWFQNRKARAKR 170 77*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 89.9 | 2.5e-29 | 109 | 171 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r RWtP++ Q++ Le+l+++G tPnk++i++it eL+++G+i+++NV++WFQNrkaR +++ Sphfalx0017s0189.1.p 109 TRLRWTPSQIQLQTLERLFEQGNGTPNKQHIKEITDELRRHGQITETNVYNWFQNRKARAKRR 171 678**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.98E-17 | 101 | 175 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-14 | 104 | 174 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.382 | 106 | 171 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-10 | 108 | 175 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.9E-17 | 110 | 170 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.39E-11 | 110 | 172 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MESEARLGRS LEFVAQQVQV QAISGGSLTP PAMGSTLPQP IHTSGSGQVM TDEQMETLRR 60 QISVYSTICQ QLVEMHKACL AQQPPLPGIM IGGQLPYDQM GTPNHKPTTR LRWTPSQIQL 120 QTLERLFEQG NGTPNKQHIK EITDELRRHG QITETNVYNW FQNRKARAKR RHQQVSVKDG 180 ESEADTDADS PRQKRQRQDR ELTHNESENF GDANGISSDG GNGGGNKQSP GQIDHHEQQE 240 DRVSSVLLQQ DDVKPTISFT SGAFDPQSFA QGATETSSVT MVDDNSKPWE AAVDANGKGT 300 LLGDSQGQII ATSEGNSSLH PVQIEERYSL AGGPVPSMDE SRKGLEKGQK EVQGTISTFW 360 NFHTVAASDP QIGEF* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00669 | PBM | Transfer from GRMZM2G038252 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385206.1 | 3e-95 | WUSCHEL-related homeobox 8-like | ||||
Refseq | XP_024385208.1 | 3e-95 | WUSCHEL-related homeobox 8-like | ||||
Refseq | XP_024385209.1 | 3e-95 | WUSCHEL-related homeobox 8-like | ||||
TrEMBL | A0A2K1K341 | 5e-94 | A0A2K1K341_PHYPA; Uncharacterized protein | ||||
STRING | PP1S224_106V6.1 | 4e-90 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20700.1 | 2e-47 | WUSCHEL related homeobox 14 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0017s0189.1.p |