PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0017s0142.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 739aa MW: 77505.9 Da PI: 6.8094

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0017s0142.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.6	1.2e-09	561	608	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Sphfalx0017s0142.1.p 561 SHSLAERIRREKISERMKHLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 608 8***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-16	555	625	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.03E-11	555	612	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.8E-17	557	622	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.866	557	607	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-7	561	608	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-12	563	613	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 739 aa Download sequence Send to blast
MASMASASPD MSLLSSHFNK IASGTGDMRS SSPHSTSSLA SFYNSFVNSP YSSHQSVGSS 60 SPGGGGTHPG WCHGQSATVD SYLITAATDQ HPILQNKVKC LAGAGALVQE HSSLSSSCKG 120 NAGAVLLQHM GSVETSREWA QQVEDTKACS QYGGSMASLL STPTSYNRAR APPRSSGNRV 180 HHMTEGAMIR ELIDRMGGGT SNSQAGTIPS SSMGVSISHR PGHPMEKLLN LGSSSCSNAP 240 AGLTNDHPSK AAGGLATLKG GVGLAATSRS SLAQFSGSSD PGFTSPLAAK FSPFCSNAAN 300 YPQAPQQTIP ALLAADDRET ISPRSGGGGG QQGHESNVGK LSPTSSTVVG LVKIAGGECI 360 SSFQNSLEGT TRVNTGAQDS QAATRVRMIS DDEKEPTGNG SSLPSLEAIE GARKNSVADE 420 AAGLESFDPG ESETNSFTLH DAGPHEPLEK KRKKVTAPAD DCRGHASSSL CPPESVVFEN 480 DNTLKPKRCK NEDGTPRKST TKEEVQKPKA EGSSQNAADN SDNDSSQGRS KEINTGKSSH 540 ADLCKQDYIH VRARRGQATD SHSLAERIRR EKISERMKHL QDLVPGCSKV TGKAVMLDEI 600 INYVQSLQRQ VEHLSMRLAT VPAEMDVNFD TMSTKEMMQQ SFGATGPIDH ASFISHNAKQ 660 QEPVGALDTI GAYAVDFRCS LNGNMETGSN CGVTPGSTMW DGDLQSIVQM GILQCGPTSL 720 MSQGFNCHLP VSNMKVEL*

Sequence ? help Back to Top

Protein Sequence Length: 739 aa Download sequence Send to blast

MASMASASPD MSLLSSHFNK IASGTGDMRS SSPHSTSSLA SFYNSFVNSP YSSHQSVGSS  60
SPGGGGTHPG WCHGQSATVD SYLITAATDQ HPILQNKVKC LAGAGALVQE HSSLSSSCKG  120
NAGAVLLQHM GSVETSREWA QQVEDTKACS QYGGSMASLL STPTSYNRAR APPRSSGNRV  180
HHMTEGAMIR ELIDRMGGGT SNSQAGTIPS SSMGVSISHR PGHPMEKLLN LGSSSCSNAP  240
AGLTNDHPSK AAGGLATLKG GVGLAATSRS SLAQFSGSSD PGFTSPLAAK FSPFCSNAAN  300
YPQAPQQTIP ALLAADDRET ISPRSGGGGG QQGHESNVGK LSPTSSTVVG LVKIAGGECI  360
SSFQNSLEGT TRVNTGAQDS QAATRVRMIS DDEKEPTGNG SSLPSLEAIE GARKNSVADE  420
AAGLESFDPG ESETNSFTLH DAGPHEPLEK KRKKVTAPAD DCRGHASSSL CPPESVVFEN  480
DNTLKPKRCK NEDGTPRKST TKEEVQKPKA EGSSQNAADN SDNDSSQGRS KEINTGKSSH  540
ADLCKQDYIH VRARRGQATD SHSLAERIRR EKISERMKHL QDLVPGCSKV TGKAVMLDEI  600
INYVQSLQRQ VEHLSMRLAT VPAEMDVNFD TMSTKEMMQQ SFGATGPIDH ASFISHNAKQ  660
QEPVGALDTI GAYAVDFRCS LNGNMETGSN CGVTPGSTMW DGDLQSIVQM GILQCGPTSL  720
MSQGFNCHLP VSNMKVEL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	449	453	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	9e-49	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0017s0142.1.p