PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0017s0092.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Nin-like

Protein Properties

Length: 1139aa MW: 124425 Da PI: 4.905

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0017s0092.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.6	4.3e-27	801	851	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l+ ++++F +++kdAA+++gvc+T+LKriCRq+GI+RWP+Rki+++ Sphfalx0017s0092.1.p 801 EKTIGLDIIQQHFTGSLKDAARSIGVCPTTLKRICRQHGISRWPSRKINKV 851 899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.552	786	871	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-24	804	851	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.13E-21	1042	1133	No hit	No description
SMART	SM00666	9.8E-17	1053	1135	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.4E-19	1053	1132	No hit	No description
PROSITE profile	PS51745	21.918	1053	1135	IPR000270	PB1 domain
Pfam	PF00564	3.6E-14	1054	1132	IPR000270	PB1 domain
CDD	cd06407	1.47E-29	1054	1132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1139 aa Download sequence Send to blast
MDRSVNQVTA TYYLRHQEED QQQNWGTTEF IALNQQQQQQ MMMMVAPAAS GLSSIGEQQQ 60 LQHHPKFQVD DVVLAELMDM EIPFCSEQIL LEQPWMSSSN CSPAVAAEFA FNVSGHQHHL 120 YSNSINSNSN ITTFANLQAG CLPPPANSFS PMGHPIPSAH FPVSQEESEE THGSDFTTMP 180 PSQGNLGSTI SGENFAELSQ LLLGVTANNS TEGEGEEGEA AEYSAMIPGE QLQSLIPLPP 240 PPPPPLVQCR SFSRNHEAAG GGGILQHNSS ILCYEKALDD LVTSSSSSSL EMEEARSSGQ 300 VKQVSRARSG GAAAAGRLGY HGLTIQERTM QALQYIGKAC VDVLVQVWMP MKTDDNRVLL 360 TTREQPFVLE HKTDHRLQYY RTVSEEYEFA VTSSSPGLPG RVFLQQVPEW TPNVQFYNSQ 420 EYLRVKDAQK YDVRGTLAVP VFEPSSRNCL AVIELVMSAE KLQYAPEIDI ICRALQSVNL 480 ASSDGTELPA LEMRTQGRQA ALAEIAEVLT AVCETHKLPL AQTWIPGSVT CHAMNFIDGN 540 DSNDSNRRFM NSYESSSSNS SSSSNNNDNG SGGRSRVCLR TADGPHYVND PRVWGFRHAC 600 SEHFLEKGQG LPGKAYVSNQ PSFEPDVKNY SKIEYPLGHY ARLFGLGAAV AIRLRSIHTG 660 SDDYVLEFFL PPTCVNSQEQ QVVLNSLSIT MQRVCRSLRT VSDKELQEEK GREFQFEENY 720 QRNSGGSLRV STVGTLASPD TGEKQEVEDP QISNVQSLNG AEIEESGELT EEGSLVFTSM 780 RMGLDAATQK QRLDRRRGTS EKTIGLDIIQ QHFTGSLKDA ARSIGVCPTT LKRICRQHGI 840 SRWPSRKINK VNRSLKKLQG VIESVHGADV HLHLTGAQCD QIRAQESADM QENNDRNSGS 900 TSSYSRPGSN PNAFDGVADG GGAKSMTGRD AAEALRAEAM KIFGESKSSM SISEVAAFSE 960 NSGVGDDKSS DAIEAAEWAN HKSDSVFIES QVHGSCGALT AVATNAECIP YCLDADQISG 1020 HAHEQSKESG SSHAPHGNEC SSPSSGIGNM ASSVTVKATF EADTVRFKLA FGSSFMELKN 1080 EIALRFQFNG RDFDLKYLDD DEEWMLLTCD RDLSECIDVM QSLGGHVIKL LVAMATRT*

Sequence ? help Back to Top

Protein Sequence Length: 1139 aa Download sequence Send to blast

MDRSVNQVTA TYYLRHQEED QQQNWGTTEF IALNQQQQQQ MMMMVAPAAS GLSSIGEQQQ  60
LQHHPKFQVD DVVLAELMDM EIPFCSEQIL LEQPWMSSSN CSPAVAAEFA FNVSGHQHHL  120
YSNSINSNSN ITTFANLQAG CLPPPANSFS PMGHPIPSAH FPVSQEESEE THGSDFTTMP  180
PSQGNLGSTI SGENFAELSQ LLLGVTANNS TEGEGEEGEA AEYSAMIPGE QLQSLIPLPP  240
PPPPPLVQCR SFSRNHEAAG GGGILQHNSS ILCYEKALDD LVTSSSSSSL EMEEARSSGQ  300
VKQVSRARSG GAAAAGRLGY HGLTIQERTM QALQYIGKAC VDVLVQVWMP MKTDDNRVLL  360
TTREQPFVLE HKTDHRLQYY RTVSEEYEFA VTSSSPGLPG RVFLQQVPEW TPNVQFYNSQ  420
EYLRVKDAQK YDVRGTLAVP VFEPSSRNCL AVIELVMSAE KLQYAPEIDI ICRALQSVNL  480
ASSDGTELPA LEMRTQGRQA ALAEIAEVLT AVCETHKLPL AQTWIPGSVT CHAMNFIDGN  540
DSNDSNRRFM NSYESSSSNS SSSSNNNDNG SGGRSRVCLR TADGPHYVND PRVWGFRHAC  600
SEHFLEKGQG LPGKAYVSNQ PSFEPDVKNY SKIEYPLGHY ARLFGLGAAV AIRLRSIHTG  660
SDDYVLEFFL PPTCVNSQEQ QVVLNSLSIT MQRVCRSLRT VSDKELQEEK GREFQFEENY  720
QRNSGGSLRV STVGTLASPD TGEKQEVEDP QISNVQSLNG AEIEESGELT EEGSLVFTSM  780
RMGLDAATQK QRLDRRRGTS EKTIGLDIIQ QHFTGSLKDA ARSIGVCPTT LKRICRQHGI  840
SRWPSRKINK VNRSLKKLQG VIESVHGADV HLHLTGAQCD QIRAQESADM QENNDRNSGS  900
TSSYSRPGSN PNAFDGVADG GGAKSMTGRD AAEALRAEAM KIFGESKSSM SISEVAAFSE  960
NSGVGDDKSS DAIEAAEWAN HKSDSVFIES QVHGSCGALT AVATNAECIP YCLDADQISG  1020
HAHEQSKESG SSHAPHGNEC SSPSSGIGNM ASSVTVKATF EADTVRFKLA FGSSFMELKN  1080
EIALRFQFNG RDFDLKYLDD DEEWMLLTCD RDLSECIDVM QSLGGHVIKL LVAMATRT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024400585.1	0.0	protein NLP6-like
TrEMBL	A0A2K1J2N5	0.0	A0A2K1J2N5_PHYPA; Uncharacterized protein
TrEMBL	A9SWF7	0.0	A9SWF7_PHYPA; Predicted protein
STRING	PP1S26_246V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-135	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0017s0092.1.p