PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0017s0086.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 503aa    MW: 54009.1 Da    PI: 7.4708
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0017s0086.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-19298349156
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           + y+GVr ++ +grW AeIrd       r r++lg+f+ta +Aa+a++aa+++l+g+
  Sphfalx0017s0086.1.p 298 PVYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAVDAARAYDAAARRLRGA 349
                           68********.**********32....25**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.7E-13298348IPR001471AP2/ERF domain
PROSITE profilePS5103222.089299356IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-21299357IPR016177DNA-binding domain
SMARTSM003805.9E-31299362IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-29299356IPR001471AP2/ERF domain
CDDcd000186.17E-15300356No hitNo description
PRINTSPR003675.0E-12300311IPR001471AP2/ERF domain
PRINTSPR003675.0E-12338358IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MALHDMLLST SMSSKRKWRD NMELEADDDQ SEQVLWGACV RCAAPALYPF CTMCSSAQAV  60
TECCSPASSQ LPLQPSHEAC SLDFSNWDDI PSLREQDFSV HSFGDQAQVL QRTLEVEVRD  120
PVLDHKCPGS TSAAVADGDQ DLDGIAAVVG QRALFGSSAA GDQVQCWPPA GHSSCASSNP  180
PKLVQDAAWH TIPAGEAREQ PYQMMTGKSF LNLKLLSPET ANSATFARES SSLRSSISVG  240
VCTNAPQAEG GREKNSDALF PFLESLRAFT PAESSHSKSR SGTSTTVDGD GALGTSAPVY  300
RGVRKRPWGR WSAEIRDRIG RCRHWLGTFD TAVDAARAYD AAARRLRGAK ARTNFPLPLA  360
ACSSSAPSPS SSSSSHIELF FHGRRPRADC IRSEALSDQV LRIQPLTTQN SSSNTWHAST  420
GLLQPCSRSK TIGEETRRAK ATDSVLIYAP AARATGGSGG HLQRLAANQH STDFVAGGHD  480
RDSAILELEL KLGFRRSSSK RP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-16300357361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A4e-16289356472Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.13e-15ERF family protein