PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0017s0074.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C2H2

Protein Properties

Length: 458aa MW: 52535.7 Da PI: 7.7916

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0017s0074.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00095	105	124	3	22
ETTTTEEESSHHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHirt 22 C+ Cg sF + + +H+r+ Sphfalx0017s0074.1.p 105 CSTCGPSFEDMAKYSSHLRK 124 ******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02992	1.3E-39	4	144	IPR004242	Transposon, En/Spm-like
PROSITE profile	PS50157	8.663	103	135	IPR007087	Zinc finger, C2H2
Pfam	PF13960	3.5E-35	340	454	IPR025452	Domain of unknown function DUF4218

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
RPTSVWPVVV MNYNLPPWLS MKKGFLLLSL IIPGPSKVKN LDTYLALVVD ELKTLWDGVW 60 AYDGRKTTGG IPRVFKLRAI CMWTMHDYPG FGFVSGLQTQ GYKACSTCGP SFEDMAKYSS 120 HLRKIVYLGH TKFLPLGHDM KSDPLLFSSF DMPYGDERDI PEATTFAYWR DVANRVIDPN 180 DSMVFEGSGL TRWGILNSLA YWGELKIRHL LDPMHIEGNV GKAIIKQLYG EKDSNFNREA 240 CEDFERHPDV WITVDPNTGI EQQPSAPWTL TTHERRDFRN RIGEMRFPTG YGVNLQKAFG 300 RDDDHKWPRY LKKHDYHRLL QHILPVAIMG LASAEVQDAL WSLGNLLRWV CSKELFVEEI 360 PRMRVIAAEV VCKLEKAFPP SLFDCRVHLL VHLVDEIAIA GPVHCRWMYW LERYMAVSKG 420 YVRNHARVEG SMAARHLAAE SMFYCTNILA TIDPSCPH

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

RPTSVWPVVV MNYNLPPWLS MKKGFLLLSL IIPGPSKVKN LDTYLALVVD ELKTLWDGVW  60
AYDGRKTTGG IPRVFKLRAI CMWTMHDYPG FGFVSGLQTQ GYKACSTCGP SFEDMAKYSS  120
HLRKIVYLGH TKFLPLGHDM KSDPLLFSSF DMPYGDERDI PEATTFAYWR DVANRVIDPN  180
DSMVFEGSGL TRWGILNSLA YWGELKIRHL LDPMHIEGNV GKAIIKQLYG EKDSNFNREA  240
CEDFERHPDV WITVDPNTGI EQQPSAPWTL TTHERRDFRN RIGEMRFPTG YGVNLQKAFG  300
RDDDHKWPRY LKKHDYHRLL QHILPVAIMG LASAEVQDAL WSLGNLLRWV CSKELFVEEI  360
PRMRVIAAEV VCKLEKAFPP SLFDCRVHLL VHLVDEIAIA GPVHCRWMYW LERYMAVSKG  420
YVRNHARVEG SMAARHLAAE SMFYCTNILA TIDPSCPH

Link Out ? help Back to Top
Phytozome	Sphfalx0017s0074.1.p