PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0017s0016.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 568aa    MW: 62838.4 Da    PI: 8.336
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0017s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.3e-0689111123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C++C+k F r  nL+ H r+H
  Sphfalx0017s0016.1.p  89 YVCEICSKGFQRDQNLQMHKRRH 111
                           9*********************9 PP
2zf-C2H212.80.00037166188123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++C++ +  +s++k H +++
  Sphfalx0017s0016.1.p 166 WRCEKCSRGYAVQSDYKAHVKSC 188
                           58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.72E-586112No hitNo description
Gene3DG3DSA:3.30.160.601.9E-588111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.004389111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.40689111IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SMARTSM00355150130160IPR015880Zinc finger, C2H2-like
SMARTSM0035563166193IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MMDTFSRGTL QNGSGTGSSG AAVDRNIVHV VELSPSAADI PSLDRSSPPP PSSANSINKK  60
CKRRQAGKPD ADAEVVALTP KRLMESDRYV CEICSKGFQR DQNLQMHKRR HKVPWTLPKR  120
GTSEVLKRVY VCPVESCLHH NACHALGDLV GIRKHYRRKH STEKQWRCEK CSRGYAVQSD  180
YKAHVKSCGA RGHSCDCGRV FSRVESFIEH HDECNATVRK ERGAIIAHNM GDRAQDWDGQ  240
IRANHSGWNL SQEDAGNVQG VQNCSPSSGR QGIIHAFMPS SIATWENAEP LGTNSWLSMW  300
VDPSFLDSQR SVSVDDNEDF VTSPSRTDSA GSLVNINPTL IRTSSYKTSM TIPAAPCSNQ  360
RQHSKIQFQN HVSCADHDAL RLSIGPSLVD IVMPTCPSEK KHDFILMEPI QKLQLEQEKR  420
NSDIMAVYLR RMRSKCDHIE NQVPAKELLS GTMTDPREGS YDPERMKPAQ NGGSLLIRPL  480
DRRLSDSHHE GPGSSCCISS RPESSLYRQA SASSDSNIDS TYNNGRGSST STILSPEVSL  540
VEEHTSVAPT KTRSIVQFWI PKSNHGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-17163216457Zinc finger protein JACKDAW
5b3h_F1e-17163216457Zinc finger protein JACKDAW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.12e-88C2H2-like zinc finger protein