PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0016s0217.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C2H2

Protein Properties

Length: 1290aa MW: 140477 Da PI: 5.8167

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0016s0217.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00087	388	409	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rH r+H Sphfalx0016s0217.1.p 388 KCDKCSREFCSPFNYRRHTRMH 409 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.305	387	414	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	389	409	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1290 aa Download sequence Send to blast
MVTDYKKIKE QDISVAAAFM DLEAGLLAGR SCLLVGVEES KHVPKACKGS SEDNHHPNAL 60 ASGDSLFLDI NGGSKDYACV DTEQGKPMPA YSVDPKFVKS TSKNEISFLE REEGKPSTDI 120 KEGTEVVAEL PGLRRRRGSK LDIQKAQHSP DGGGGEVANG DRKSGSWSVH SKVVPLPTGL 180 ETRQQKSVEK PSSKGVKGKG THSDEDLSVQ QSAAKAAGKK GTEPSSVLDT FFQTIVQEPC 240 MSFTSRPGDK PTAHYTTWPD VFDHHAAVVN KIPKSLKIEE MGTKMMRDGS WDEGSGAAAD 300 SHSMELERDP MISKMKAAGS LGRVGSLQGA AARDGNLQGL KTVPQAMAVF AQAAAAAKAT 360 GKQIPFLDDL TDLPGWPLLS PSKVQLQKCD KCSREFCSPF NYRRHTRMHR RISPLDKEDL 420 NMKRKHITEF WDKLLPEEAQ HIISSKNCEV YEDLSATATG KSAVTTTLSS FLNQASVKSL 480 PHAYLKAGQE LLEIVDNRGG VFPLPSEHLL NILDEASEKT FLCGEPPLAT QNYGYQADAG 540 KNQYEEKNLI ASLSFIVEQT LVKAWMTNKE AEALRNQQEL VKEEEAALMK KRERHFQQKK 600 KKKKSRQKGV KERKGNASQL APHEMENESM EDEEGPSPEI IEEDDSPTAS SISLASSGHE 660 PNLPEPLELE NYEQAGQVVV RDVALEGEVC TREPLVPMQK ELINTQTSHE AVGQGNQQEC 720 SQDVRDLAAG SLHNCCADGL FCSKVTMEES RMQQLACVQV PLDENALGAS EGSQAPVQAK 780 SGQNSLECLK VEQEEQWSVQ YRGQELEQKV ERVIKDPRMQ AAENLPSSIF RRTGQNLCGM 840 ESRYLEGSQH QNFSFKPSAR KPSTTVSAYA TKAGSGVSSS LGFGLPTSQQ QQYRSKPVTN 900 RSPHVVWTRK TPPQPAAVDS ATESLEDESE KCDATASNLH EMVESFPESH ALNVDSVVIT 960 SKAPKEERLI SENREAEADA AVSSSTSGGV FGGVSKMSSM SLGMFNLDTN SEDWPCLPHR 1020 SSAQSTYGPK PTSISVLSMS SIQPEAGAVA MVINKGSVSC PKEYPEQEGF HKSLPSTVHV 1080 PKEAQAEGCL DDSRQVLVGS LTVPLDAAHM PYPLLQHSGG LDVAEAFDGQ SKDFSAGVSH 1140 YTYSMPRHLP FMSLNPKNLK SHAGSAATGE QRERGTVLKP GSLLSGTSRF LAAKVWRPVR 1200 SSGEHDEDAD VNSSHVGLTH IASECEDGVM DMGASHSAWI AEALECHYSR WITAMQDPEA 1260 VHHTEPVQSC MEVQSASWNE FFERARARC*

Sequence ? help Back to Top

Protein Sequence Length: 1290 aa Download sequence Send to blast

MVTDYKKIKE QDISVAAAFM DLEAGLLAGR SCLLVGVEES KHVPKACKGS SEDNHHPNAL  60
ASGDSLFLDI NGGSKDYACV DTEQGKPMPA YSVDPKFVKS TSKNEISFLE REEGKPSTDI  120
KEGTEVVAEL PGLRRRRGSK LDIQKAQHSP DGGGGEVANG DRKSGSWSVH SKVVPLPTGL  180
ETRQQKSVEK PSSKGVKGKG THSDEDLSVQ QSAAKAAGKK GTEPSSVLDT FFQTIVQEPC  240
MSFTSRPGDK PTAHYTTWPD VFDHHAAVVN KIPKSLKIEE MGTKMMRDGS WDEGSGAAAD  300
SHSMELERDP MISKMKAAGS LGRVGSLQGA AARDGNLQGL KTVPQAMAVF AQAAAAAKAT  360
GKQIPFLDDL TDLPGWPLLS PSKVQLQKCD KCSREFCSPF NYRRHTRMHR RISPLDKEDL  420
NMKRKHITEF WDKLLPEEAQ HIISSKNCEV YEDLSATATG KSAVTTTLSS FLNQASVKSL  480
PHAYLKAGQE LLEIVDNRGG VFPLPSEHLL NILDEASEKT FLCGEPPLAT QNYGYQADAG  540
KNQYEEKNLI ASLSFIVEQT LVKAWMTNKE AEALRNQQEL VKEEEAALMK KRERHFQQKK  600
KKKKSRQKGV KERKGNASQL APHEMENESM EDEEGPSPEI IEEDDSPTAS SISLASSGHE  660
PNLPEPLELE NYEQAGQVVV RDVALEGEVC TREPLVPMQK ELINTQTSHE AVGQGNQQEC  720
SQDVRDLAAG SLHNCCADGL FCSKVTMEES RMQQLACVQV PLDENALGAS EGSQAPVQAK  780
SGQNSLECLK VEQEEQWSVQ YRGQELEQKV ERVIKDPRMQ AAENLPSSIF RRTGQNLCGM  840
ESRYLEGSQH QNFSFKPSAR KPSTTVSAYA TKAGSGVSSS LGFGLPTSQQ QQYRSKPVTN  900
RSPHVVWTRK TPPQPAAVDS ATESLEDESE KCDATASNLH EMVESFPESH ALNVDSVVIT  960
SKAPKEERLI SENREAEADA AVSSSTSGGV FGGVSKMSSM SLGMFNLDTN SEDWPCLPHR  1020
SSAQSTYGPK PTSISVLSMS SIQPEAGAVA MVINKGSVSC PKEYPEQEGF HKSLPSTVHV  1080
PKEAQAEGCL DDSRQVLVGS LTVPLDAAHM PYPLLQHSGG LDVAEAFDGQ SKDFSAGVSH  1140
YTYSMPRHLP FMSLNPKNLK SHAGSAATGE QRERGTVLKP GSLLSGTSRF LAAKVWRPVR  1200
SSGEHDEDAD VNSSHVGLTH IASECEDGVM DMGASHSAWI AEALECHYSR WITAMQDPEA  1260
VHHTEPVQSC MEVQSASWNE FFERARARC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	589	603	KKRERHFQQKKKKKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	4e-53	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Sphfalx0016s0217.1.p