PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0016s0132.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C2H2 | ||||||||
Protein Properties | Length: 877aa MW: 95757.1 Da PI: 8.6155 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.8 | 3.9e-05 | 109 | 131 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C++ F r nL+ H r+H Sphfalx0016s0132.1.p 109 FICEICNQGFQRDQNLQMHRRRH 131 89********************9 PP | |||||||
2 | zf-C2H2 | 13.4 | 0.00023 | 190 | 212 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s++k H++t+ Sphfalx0016s0132.1.p 190 WVCERCSKGYAVQSDYKAHLKTC 212 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.9E-5 | 108 | 131 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.012 | 109 | 131 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.679 | 109 | 131 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 111 | 131 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 154 | 184 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 150 | 190 | 210 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 140 | 216 | 236 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:2000904 | Biological Process | regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 877 aa Download sequence Send to blast |
MCTSMTAHQL HAHAAQILRL SGGCDDIHPI TNAAVITLQK NSPAADSPGS GDLYSNVGDH 60 PSHDSLQLAA TPANSGGNNK RRRRPAGTPD PDAEVVALSP KTLMESDRFI CEICNQGFQR 120 DQNLQMHRRR HKVPWKLLKN TSSSRLATHK KRVYVCPELT CLHHEPQHAL GDLVGIKKHF 180 RRKHCSKKQW VCERCSKGYA VQSDYKAHLK TCGTRGHCCD CGRVFSRVES FIEHQGSCSA 240 AAKVQKGTNV RSGKKLSITL QQRRSTLMST RGRNVVSSTD IASPSRESSD TSIVPFANSA 300 GIELENTAAA RGSADSSTFI NEQVTTRTTS SCCRFDQSSN HNITRSSNVI PTWVLERRSE 360 LQQLLPLPGI DQVQSRLQES YNNSDVTLAS STVEQAGHDM QLQALASHNF SARCSNKNSA 420 ICREVISNFT RDCRSLVRPA SSDSCCVVDD VPSLQLTIGH FSESPRDPQM ISTSDRRSKD 480 VIIDAARSRD TKPNPRADVD QTRSLHGVAM SDYQLQTVQE VNPDAEAAAS GDHHAALIMQ 540 RSASNKGIGE DLALMSTFPA ITASLPPRQT AQDSGPAAGV PDHNGSPDFI DKHIAKCADH 600 HHQQVISQSE FPIVARTSRI EGALTRQTEL AATTCAEANK AREQARMEMK SALSDLAAAR 660 RTKEQARLES TEAGNEIARA ELIKHQAREQ LQQASAEKAF AQHARDVAKR QKDMAETELA 720 DAKRMRERAQ AEIDKSRLLH LKARSSRDDQ CSPGAVNAIT RLMSSPRDHH ILQNSTEICQ 780 VCKSESAVGS DLTLGLHQTN RGNTPIRPSS AVNASRPVPP DHKIRATQTA SHEISSTSAA 840 GLVSYPKRGE SIKVRLEDAT CSDKSQLMLE QSHGIN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-17 | 187 | 240 | 4 | 57 | Zinc finger protein JACKDAW |
5b3h_F | 7e-17 | 187 | 240 | 4 | 57 | Zinc finger protein JACKDAW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 8e-98 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0016s0132.1.p |