PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0016s0124.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C2H2 | ||||||||
Protein Properties | Length: 739aa MW: 75497.9 Da PI: 10.0854 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.2e-05 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Sphfalx0016s0124.1.p 88 FVCEICNKGFQRDQNLQLHRRGH 110 89******************988 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.00058 | 164 | 186 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Sphfalx0016s0124.1.p 164 WKCDKCSKRYAVQSDWKAHSKTC 186 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.6E-5 | 87 | 110 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.05E-7 | 87 | 110 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 88 | 110 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 129 | 159 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.9E-4 | 152 | 185 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.05E-7 | 159 | 184 | No hit | No description |
SMART | SM00355 | 140 | 164 | 184 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 739 aa Download sequence Send to blast |
MTLSNITIAS AGEASVSSGN RTDGNNNSAQ QQLPTTSNPA TPATTTTTVS SGQPPGGAKR 60 KRNLPGTPDP EAEVIALSPR TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT 120 SKEIRKRVYI CPEPSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK 180 AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RVSAAGKHGG DSNMVVVGPS 240 MSILGGVPPS SPHGNNNLGR VNGGGDSLAS IGGGGSMRPG LPSSMAAGLG RLGEGGGGGG 300 GGLSLLPPRW GQAVGNAPAT SGILNPLEYD VPQAPRPSSS GGGGLLPMVS SATGSLFAHL 360 FSSGGTMPGL HGTHPGNSGA TSMGMGISGF SDFTAGANQT ERGSATAGLS LSSTATGLSS 420 CSSSVYNNGI GSVPSGSLLF NQQQQQQQQQ QQQQQHTATA QMSATALLQK AAQMGATASN 480 SMLRGLGFGG GDSSSMALWQ GQRQEQGRAN EIPPNKASMV QPLQMRRQVE VPSASPVVGG 540 ASMGVSNFGG SNQGRSNDHH AAGVQDFMNS LSGGAGLFAA GSLSNMPSLF AGPNSGNMGG 600 MMPPGGNHRH HHRISTNDVM GGGGHSPYHH PAAASAAGPV SQGGSMGPSS MLPGLGGGST 660 RGEDGSDRFT HDFLGVGGAS GMAGAVGGMG RTLSQRDLAS ITSLGPGVDL GAFFTQRENL 720 RSVGASGHSP GKSWDASS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-36 | 160 | 224 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 5e-36 | 160 | 224 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00125 | DAP | Transfer from AT1G03840 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024365599.1 | 0.0 | protein indeterminate-domain 1-like isoform X1 | ||||
TrEMBL | A0A2K1L2D8 | 0.0 | A0A2K1L2D8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S165_3V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-113 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0016s0124.1.p |