PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0016s0063.3.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 935aa    MW: 102151 Da    PI: 6.9007
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0016s0063.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.11.1e-11221320198
                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld 85 
                           f+kv +  d  ++g +vlpk+ +eeh   ++++ ++ +++ de g++W+++++++ ++++  y+l+     Fv++ +++ gD+v F++ 
  Sphfalx0016s0063.3.p 221 FEKVASVTDCRRTGHFVLPKRKVEEHfpPLVEPAGVWISFLDEFGKEWSFEFCFWHSKDSriYYLK-KFFPFVQSANIRGGDTVYFSRL 308
                           777888888899999*************99999*******************99777777768888.7889****************76 PP

                           SSSEE..EEEEE- CS
                    B3  86 grsefelvvkvfr 98 
                           +  e++l+v+ ++
  Sphfalx0016s0063.3.p 309 E-PEGTLCVSYRK 320
                           5.88888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-18215325IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-16219321IPR015300DNA-binding pseudobarrel domain
CDDcd100172.18E-10220320No hitNo description
PROSITE profilePS508639.277221322IPR003340B3 DNA binding domain
SMARTSM010195.9E-7221322IPR003340B3 DNA binding domain
PfamPF023624.8E-8221320IPR003340B3 DNA binding domain
PROSITE profilePS510509.536508558IPR011124Zinc finger, CW-type
PfamPF074967.1E-6513554IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 935 aa     Download sequence    Send to blast
MGECCDQQDQ LLELVRLTKS GKKQGKILLQ LKSSSLGSSS NIANEEDAKG PVERQLQKSG  60
AELSGQSNDQ EHTLRGDSPT HESMSTPIDI YGSPREVMHE VESRTPHVDG KGPIADGDAA  120
NKSSSALATT ASTCQVPGGT SLLVGCVLGK RASRTEKQQI KGPPDWKLSD PKDKRLENAE  180
LREFKWTAAK NERSDNQVLL RTVLPPVVTD NPSGSTMIYL FEKVASVTDC RRTGHFVLPK  240
RKVEEHFPPL VEPAGVWISF LDEFGKEWSF EFCFWHSKDS RIYYLKKFFP FVQSANIRGG  300
DTVYFSRLEP EGTLCVSYRK QKPAATSKYV NGADICTNNL RMISSSNEVI QDLVNNGKSA  360
LDEVALRGDL PQQPALMEIN AADLENFTGR VFSKKKQRVD SPSLAYQSKV IDLLGVGKVL  420
RGKKGSIIRA ALPQVLHCVN TISGSLGPRR KRLWMELEEY IDWEGWQNLL QAPPGAVPTI  480
VSVEGHDFEE YTDPPVLMKR AFSISNLLRE GDQWVRCNNC GIWRRLPPGS LTSATCICSD  540
SARDPKRSHC SASQGLCNDE LDGLLGLFSD TEGRTDSDHE DCVEDEICTP RVPNSAFDEE  600
CCDDKAVLSS KASASVEMHS LEDETLDLSE NSKFHTSEKV SPKDVPTSSL QLPGLKEDST  660
TYDPLSLTVI KSTAYDTISP AKVPGGSSQV CGLKLDSIPL EPSAVLSAKK SKLEYDIRAR  720
NSSGSVPRSS LQPFGLKQVY SPSEAFAVLS NSNLNLDSNL PTDQKTPPQN ASGSNLQSVG  780
LRLHSTTYEV SAVLSTKEFD FNSKCSISEK ISPRSAPETS LQLSLSKESP PLALSSKSKL  840
DSSCHVSKKV LPMIVEGTSL QSSWFKQDSF PREPSAVLAM KKSSYVRNGA GKGHQLCAGC  900
DTSIGSAAQV CKKCGRLTDY GIRKRAQLTD QCQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-2221732520128B3 domain-containing transcription repressor VAL1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.12e-45HSI2-like 1