PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0016s0063.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Protein Properties

Length: 928aa MW: 101258 Da PI: 6.7972

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0016s0063.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.1	1.1e-11	214	313	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld 85 f+kv + d ++g +vlpk+ +eeh ++++ ++ +++ de g++W+++++++ ++++ y+l+ Fv++ +++ gD+v F++ Sphfalx0016s0063.2.p 214 FEKVASVTDCRRTGHFVLPKRKVEEHfpPLVEPAGVWISFLDEFGKEWSFEFCFWHSKDSriYYLK-KFFPFVQSANIRGGDTVYFSRL 301 777888888899999***********99999***************99777777768888.7889**************76 PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 + e++l+v+ ++ Sphfalx0016s0063.2.p 302 E-PEGTLCVSYRK 313 5.88888888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.8E-18	208	318	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.44E-16	212	314	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.16E-10	213	313	No hit	No description
SMART	SM01019	5.9E-7	214	315	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.8E-8	214	313	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.277	214	315	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	9.536	501	551	IPR011124	Zinc finger, CW-type
Pfam	PF07496	7.1E-6	506	547	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 928 aa Download sequence Send to blast
MGECCDQQDQ LLELVRLTKS GKKQGKILLQ LKSSSLGSSS NIANEEDAKG PVERQLQKSG 60 AELSGQSNDQ EHTLRGDSPT HESMSTPIDI YGSPREVMHE VESRTPHVDG KGPIADGDAA 120 NKSSSALATT ASTCQVPGGT SLLVGCVLGK RASRTEKQQI KGPPDWKLSD PKDKRLENAE 180 LPKNERSDNQ VLLRTVLPPV VTDNPSGSTM IYLFEKVASV TDCRRTGHFV LPKRKVEEHF 240 PPLVEPAGVW ISFLDEFGKE WSFEFCFWHS KDSRIYYLKK FFPFVQSANI RGGDTVYFSR 300 LEPEGTLCVS YRKQKPAATS KYVNGADICT NNLRMISSSN EVIQDLVNNG KSALDEVALR 360 GDLPQQPALM EINAADLENF TGRVFSKKKQ RVDSPSLAYQ SKVIDLLGVG KVLRGKKGSI 420 IRAALPQVLH CVNTISGSLG PRRKRLWMEL EEYIDWEGWQ NLLQAPPGAV PTIVSVEGHD 480 FEEYTDPPVL MKRAFSISNL LREGDQWVRC NNCGIWRRLP PGSLTSATCI CSDSARDPKR 540 SHCSASQGLC NDELDGLLGL FSDTEGRTDS DHEDCVEDEI CTPRVPNSAF DEECCDDKAV 600 LSSKASASVE MHSLEDETLD LSENSKFHTS EKVSPKDVPT SSLQLPGLKE DSTTYDPLSL 660 TVIKSTAYDT ISPAKVPGGS SQVCGLKLDS IPLEPSAVLS AKKSKLEYDI RARNSSGSVP 720 RSSLQPFGLK QVYSPSEAFA VLSNSNLNLD SNLPTDQKTP PQNASGSNLQ SVGLRLHSTT 780 YEVSAVLSTK EFDFNSKCSI SEKISPRSAP ETSLQLSLSK ESPPLALSSK SKLDSSCHVS 840 KKVLPMIVEG TSLQSSWFKQ DSFPREPSAV LAMKKSSYVR NGAGKGHQLC AGCDTSIGSA 900 AQVCKKCGRL TDYGIRKRAQ LTDQCQV*

Sequence ? help Back to Top

Protein Sequence Length: 928 aa Download sequence Send to blast

MGECCDQQDQ LLELVRLTKS GKKQGKILLQ LKSSSLGSSS NIANEEDAKG PVERQLQKSG  60
AELSGQSNDQ EHTLRGDSPT HESMSTPIDI YGSPREVMHE VESRTPHVDG KGPIADGDAA  120
NKSSSALATT ASTCQVPGGT SLLVGCVLGK RASRTEKQQI KGPPDWKLSD PKDKRLENAE  180
LPKNERSDNQ VLLRTVLPPV VTDNPSGSTM IYLFEKVASV TDCRRTGHFV LPKRKVEEHF  240
PPLVEPAGVW ISFLDEFGKE WSFEFCFWHS KDSRIYYLKK FFPFVQSANI RGGDTVYFSR  300
LEPEGTLCVS YRKQKPAATS KYVNGADICT NNLRMISSSN EVIQDLVNNG KSALDEVALR  360
GDLPQQPALM EINAADLENF TGRVFSKKKQ RVDSPSLAYQ SKVIDLLGVG KVLRGKKGSI  420
IRAALPQVLH CVNTISGSLG PRRKRLWMEL EEYIDWEGWQ NLLQAPPGAV PTIVSVEGHD  480
FEEYTDPPVL MKRAFSISNL LREGDQWVRC NNCGIWRRLP PGSLTSATCI CSDSARDPKR  540
SHCSASQGLC NDELDGLLGL FSDTEGRTDS DHEDCVEDEI CTPRVPNSAF DEECCDDKAV  600
LSSKASASVE MHSLEDETLD LSENSKFHTS EKVSPKDVPT SSLQLPGLKE DSTTYDPLSL  660
TVIKSTAYDT ISPAKVPGGS SQVCGLKLDS IPLEPSAVLS AKKSKLEYDI RARNSSGSVP  720
RSSLQPFGLK QVYSPSEAFA VLSNSNLNLD SNLPTDQKTP PQNASGSNLQ SVGLRLHSTT  780
YEVSAVLSTK EFDFNSKCSI SEKISPRSAP ETSLQLSLSK ESPPLALSSK SKLDSSCHVS  840
KKVLPMIVEG TSLQSSWFKQ DSFPREPSAV LAMKKSSYVR NGAGKGHQLC AGCDTSIGSA  900
AQVCKKCGRL TDYGIRKRAQ LTDQCQV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	3e-22	210	318	20	128	B3 domain-containing transcription repressor VAL1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	3e-45	HSI2-like 1

Link Out ? help Back to Top
Phytozome	Sphfalx0016s0063.2.p