PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0016s0057.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 400aa    MW: 43234.7 Da    PI: 9.3769
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0016s0057.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.1e-10329377147
                           TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                           r  WT+ Ed+ l+ a k ++++   +W+++a+ m+ gR+  qc  r+ ++
  Sphfalx0016s0057.1.p 329 RSDWTEGEDKALLSALKAFPKDsamRWDKVAEAMP-GRSKAQCFRRFSDL 377
                           678********************************.*******9999776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.913183226IPR017877Myb-like domain
SMARTSM007174187239IPR001005SANT/Myb domain
PROSITE profilePS5129412.897324382IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-8326376IPR009057Homeodomain-like
SuperFamilySSF466894.41E-12327376IPR009057Homeodomain-like
SMARTSM007172.3E-8328380IPR001005SANT/Myb domain
PfamPF002491.4E-9329377IPR001005SANT/Myb domain
CDDcd001671.86E-8332374No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDFDIVEDSR PRFQLQSGPS VVSDDKEEDR RKLSKVQIGV CVGVALLLLS FAWMQAGLVQ  60
FLAAWLALAL LVGPFAPSSV TGGDCRVGMG GLVPEDTTLE TTLSAAAEAT ERRGQKGYGS  120
RKRVANAAAD RGVGGGGVPS SREGSLMMVD EHHGFQKDAK QEEQQQKPGL GFRVAPVLHA  180
AAKDEKVEKA WSGDEIELLK KQLLKHPRGT LQRWEVIAEA FSGAHRVESV IKMSKLLGDK  240
KFSDGDSYAN FLAQRKSSST DKGIIIDSPL SQRSWEITTP KTHNVAADLD TKPPTTSKGS  300
KPKDGSNRST TRSNAAAAAA EERTKAVTRS DWTEGEDKAL LSALKAFPKD SAMRWDKVAE  360
AMPGRSKAQC FRRFSDLRET FRSAKTDSSN PGSSDQVVE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.26e-25DnaJ domain ;Myb-like DNA-binding domain