PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0015s0197.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 345aa    MW: 36418.6 Da    PI: 8.9811
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0015s0197.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.8e-09114140127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +kt+lC++f     C++G++C+FaHg+
  Sphfalx0015s0197.1.p 114 FKTRLCNRFDTAEGCRFGEKCHFAHGE 140
                           79***********************96 PP
2zf-CCCH37.73.5e-12310334126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt+lC ++++ GtC +GdrC+FaHg
  Sphfalx0015s0197.1.p 310 FKTKLCENYSK-GTCTFGDRCHFAHG 334
                           69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.14269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.2964270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-64367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-84467IPR000571Zinc finger, CCCH-type
PfamPF146082.15067No hitNo description
PROSITE profilePS5010313.3113141IPR000571Zinc finger, CCCH-type
SMARTSM003560.0035113140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-13114145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-7114144IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-6114140IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.45E-15213292IPR004088K Homology domain, type 1
SMARTSM003221.0E-13222292IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.1E-17222291IPR004088K Homology domain, type 1
PROSITE profilePS5008415.179223287IPR004088K Homology domain, type 1
PfamPF000134.4E-12225289IPR004088K Homology domain, type 1
CDDcd001056.88E-15227287No hitNo description
Gene3DG3DSA:4.10.1000.102.5E-15307341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8308340IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-7309335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624309336IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9310334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDPFGPPRKR PRPETVPYNG VNGHGPAAGQ AGDPDYKQDG SGNRTKPCTK FFSTSGCPYG  60
EGCHFLHFVP GGIQGIGMGA LAPLSNVGSM GSTGTRKVVG GLGPDDQGAN LGGFKTRLCN  120
RFDTAEGCRF GEKCHFAHGE MELRKSNSST LPPLDRDVYS SVDHNRDRGS GGYRGGMYGS  180
DGGRFGAGRE RDGGGRFSSS TGMGSYREPT PPGMAAAASF GASSTAKISI EASLAGAIIG  240
KGGINAKQIC RLTGAKISIR EHESDPTLRN VEMEGSFEQI KQASQMVREV LMHRDNVPSR  300
PASGFGSHNF KTKLCENYSK GTCTFGDRCH FAHGSAELRE PLRV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1812KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386818.11e-170zinc finger CCCH domain-containing protein 14-like
RefseqXP_024386826.11e-170zinc finger CCCH domain-containing protein 14-like
RefseqXP_024386832.11e-170zinc finger CCCH domain-containing protein 14-like
RefseqXP_024386840.11e-170zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A2K1L9591e-169A0A2K1L959_PHYPA; Uncharacterized protein
STRINGPP1S59_351V6.11e-170(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-31C3H family protein