PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0015s0086.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family SRS
Protein Properties Length: 284aa    MW: 28979.3 Da    PI: 8.9348
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0015s0086.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702204.33.5e-63692363154
                DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstk 90 
                           +g+++Cq+CGnqakkdC+++RCRtCCksrgf+C+th+kstWvpaakrrerq++++aa++ a+a    + +skr r+l  +++ + +s++
  Sphfalx0015s0086.1.p  69 TGSSACQECGNQAKKDCSYQRCRTCCKSRGFECTTHLKSTWVPAAKRRERQAAESAAAAAASAGLlLRPKSKRARSLVVANSLTYTSAT 157
                           67899*********************************************999888766665555467778888887555554544444 PP

                DUF702  91 lssaeskkeletss................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                            +++ s    + ++                lP+ev+++a+f+cvr+ +v+dge+e+aYq++v+igGh+fkG+LydqGl++
  Sphfalx0015s0086.1.p 158 SPRGGSADLNS-AHlsaaphpsqptsakggLPPEVRAQALFKCVRLMGVEDGENEFAYQATVKIGGHIFKGVLYDQGLDS 236
                           44444332222.2246788999999999*************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.7E-5871235IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.1E-2674115IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-25187234IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MNVQSLQQHN PAHAGPSDPD NHLHLHESRA EELWGATAGG GGKVKEGVVG QGQGQQVGGG  60
GTTSTGTTTG SSACQECGNQ AKKDCSYQRC RTCCKSRGFE CTTHLKSTWV PAAKRRERQA  120
AESAAAAAAS AGLLLRPKSK RARSLVVANS LTYTSATSPR GGSADLNSAH LSAAPHPSQP  180
TSAKGGLPPE VRAQALFKCV RLMGVEDGEN EFAYQATVKI GGHIFKGVLY DQGLDSGQVA  240
AAPSSSLGDL QLGGSRGGMP SSSALIDPAS LYVSGSALLG ALR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402501.12e-77protein LATERAL ROOT PRIMORDIUM 1-like isoform X1
TrEMBLA9RNV13e-76A9RNV1_PHYPA; Predicted protein
STRINGPP1S19_109V6.16e-77(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.26e-40Lateral root primordium (LRP) protein-related