PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0014s0203.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

G2-like

Protein Properties

Length: 261aa MW: 27846.4 Da PI: 8.7746

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0014s0203.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	110.6	8e-35	54	108	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtpeLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Sphfalx0014s0203.1.p 54 KQRLRWTPELHERFVDAVTQLGGPDRATPKGVLKVMGVQGLTIYHVKSHLQKYRL 108 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.512	51	111	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-33	52	109	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.33E-18	53	108	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.1E-26	54	109	IPR006447	Myb domain, plants
Pfam	PF00249	3.8E-10	56	107	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-25	143	189	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MYQTTKLSAS SSLMPQRPGG QAVEPWARPP AGAGGPSFSA GSPGVSGGTA AAAKQRLRWT 60 PELHERFVDA VTQLGGPDRA TPKGVLKVMG VQGLTIYHVK SHLQKYRLAK YIPDSLSDGG 120 AGGISDKKNP ADMFPSLEPT SGFQITEALR MQMEVQKRLH EQLEVQRNLQ LRIEAQGKYL 180 QQIFEEQQKL NTINSTPMAS DTDEAGAPGF KPPLAETVDK VEIKVPPDVT TQAPGPSGSL 240 IPTEASGLNS QTPQSEYAKS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-27	54	111	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-27	54	111	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-27	54	111	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-27	54	111	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-27	54	111	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-27	54	111	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-27	54	111	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-27	54	111	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-27	54	111	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-27	54	111	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-27	54	111	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-27	54	111	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024360639.1	3e-85	protein PHOSPHATE STARVATION RESPONSE 1-like
Swissprot	Q9SJW0	1e-74	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2K1KZM9	7e-84	A0A2K1KZM9_PHYPA; Uncharacterized protein
STRING	PP1S226_24V6.1	7e-85	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	6e-77	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0014s0203.1.p