PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0014s0200.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MIKC_MADS
Protein Properties Length: 267aa    MW: 29512.3 Da    PI: 8.2479
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0014s0200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.38.4e-28959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ien + rqvtfskRr g+lKKA+EL vLCdaeva+i+fsstgkl+e++s
  Sphfalx0014s0200.2.p  9 KKIENPTSRQVTFSKRRGGLLKKAHELAVLCDAEVALIVFSSTGKLFEFAS 59
                          68***********************************************86 PP
2K-box89.94.8e-30811691199
                 K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                            +++  l +e+ kL++++e Lq++qRh+lGedL+ L++ +L qLeqqL+ + +++ ++Kn+llle+ie+lq+ke+elq++n +L +kl+
  Sphfalx0014s0200.2.p  81 GSNSDFLGREVVKLRQQVERLQSTQRHMLGEDLSALTVPDLLQLEQQLDIGSSRVQARKNQLLLEEIEDLQRKEHELQQANAELLQKLA 169
                           567788899*****************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.0E-43160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.403161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-33275IPR002100Transcription factor, MADS-box
CDDcd002651.18E-46276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-30323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.5E-2683168IPR002487Transcription factor, K-box
PROSITE profilePS5129715.93584174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGRGKIEIKK IENPTSRQVT FSKRRGGLLK KAHELAVLCD AEVALIVFSS TGKLFEFASP  60
GSMRDILDRY NKCPDGVQTG GSNSDFLGRE VVKLRQQVER LQSTQRHMLG EDLSALTVPD  120
LLQLEQQLDI GSSRVQARKN QLLLEEIEDL QRKEHELQQA NAELLQKLAN AKGIAEAIAR  180
AGPSVSQGQP NILARDPGGS SLTAPTVYPS HPNLRDPQTS QTSLHLGLFS ESFPPSSSRR  240
QLQESPVEQE GETSLRWDHP QYRSQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-21170169MEF2C
5f28_B2e-21170169MEF2C
5f28_C2e-21170169MEF2C
5f28_D2e-21170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394528.11e-129MADS-box transcription factor 5-like
SwissprotQ9XGJ41e-57GGM13_GNEGN; MADS-box protein GGM13
TrEMBLA0A2K1JHV31e-127A0A2K1JHV3_PHYPA; Uncharacterized protein
STRINGPP1S209_130V6.21e-128(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.16e-56MIKC_MADS family protein
Publications ? help Back to Top
  1. Winter KU, et al.
    MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants.
    Proc. Natl. Acad. Sci. U.S.A., 1999. 96(13): p. 7342-7
    [PMID:10377416]