PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0014s0086.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 296aa    MW: 33625.8 Da    PI: 7.2762
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0014s0086.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.33.6e-1246122272
              trihelix   2 WtkqevlaLiearremeerlrrg......klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                           Wt +e ++L ++rre+ er ++g      +++  +W++  ++++ +g+ rs+ qC++kwe +   +kk+++ ek+  
  Sphfalx0014s0086.1.p  46 WTVSELQVLQAVRREDFERQSKGgnrekhRSAHERWKWMEDRCWGQGVLRSAGQCQDKWEGITAGFKKVNDYEKQLP 122
                           **************8888888753333335999***************************************99864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.12138108IPR017877Myb-like domain
PfamPF138376.2E-945121No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MFLGMARHDE NAPGALENKD AINVEEAVPE EMLGDDQTRH YKKGMWTVSE LQVLQAVRRE  60
DFERQSKGGN REKHRSAHER WKWMEDRCWG QGVLRSAGQC QDKWEGITAG FKKVNDYEKQ  120
LPLGGTSYWQ LGSDEKKRMR LPPNFHKEVF MSLQEWYVKS RTGEPGILFD SLAPPRGAAS  180
NMELSGSVGD ESDENDIVDP TLAGKRRRVG GSKSAGFDRL AEVLERNNKT MVDALRLSED  240
RKDNRHRQTM QFEREKHKDL YDLQMKLGNG YIGALNRIGS ALDQIAMAMQ GTSHP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204208KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400069.11e-158trihelix transcription factor ASR3-like isoform X2
TrEMBLA0A2K1J2X31e-151A0A2K1J2X3_PHYPA; Uncharacterized protein
STRINGPP1S26_50V6.11e-151(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.14e-20Trihelix family protein