PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0014s0052.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 300aa    MW: 35039.2 Da    PI: 6.5454
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0014s0052.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.53.2e-2249129186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           +W  +e+++ i++r e+e+++ ++k++k+lWe ++ km+e+g++r++ qCk+kw+nl ++yk  +++e ++      + p+f++l+
  Sphfalx0014s0052.2.p  49 QWGYDETKEFIALRAELEKDFMQTKRNKTLWEFIAGKMKEKGYRRNADQCKCKWKNLVNQYKGKETSEVDN-----GKLPFFEELD 129
                           7******************************************************************9984.....3589***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122039.25E-2748113No hitNo description
PfamPF138371.4E-1949131No hitNo description
PROSITE profilePS500906.96950106IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRPGGPMGE NLAVMAMLPM QTSPDVGVAK LGSMTPGIRR SKKEDRIPQW GYDETKEFIA  60
LRAELEKDFM QTKRNKTLWE FIAGKMKEKG YRRNADQCKC KWKNLVNQYK GKETSEVDNG  120
KLPFFEELDA IFKDRAKNMD RMMLLEAEAG SRPHKKGKLG KPPSSDEDSD DGNDEDNDSE  180
DERINIGARK SRKSDKGQRV TAEKFRANSM QEVLEGFFQQ QQRAEEHWHD AVERREHEWH  240
MREQEWRDAM EKLEQERITR EQGWHEREEQ RRAREEARAQ KRDELFAALL SKLAQEDGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A8e-1246127386DNA binding protein GT-1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381970.13e-98trihelix transcription factor GT-3b-like
TrEMBLA0A176VZJ21e-104A0A176VZJ2_MARPO; Uncharacterized protein
TrEMBLA0A2R6W4061e-104A0A2R6W406_MARPO; Uncharacterized protein
STRINGPP1S285_47V6.11e-97(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-38Trihelix family protein