PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0014s0052.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | Trihelix | ||||||||
Protein Properties | Length: 311aa MW: 36335.6 Da PI: 6.0592 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 66.7 | 4.9e-21 | 49 | 140 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikeg.....ekkrt.sessstcpyfd 83 +W +e+++ i++r e+e+++ ++k++k+lWe ++ km+e+g++r++ qCk+kw+nl ++yk +++ e+k+t + + + p+f+ Sphfalx0014s0052.1.p 49 QWGYDETKEFIALRAELEKDFMQTKRNKTLWEFIAGKMKEKGYRRNADQCKCKWKNLVNQYKGKETTfqpdyEGKETsEVDNGKLPFFE 137 7*************************************************************987542222144443133444667777 PP trihelix 84 qle 86 +l+ Sphfalx0014s0052.1.p 138 ELD 140 766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 6.92E-27 | 48 | 113 | No hit | No description |
Pfam | PF13837 | 1.2E-17 | 49 | 142 | No hit | No description |
PROSITE profile | PS50090 | 6.969 | 50 | 106 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MGRPGGPMGE NLAVMAMLPM QTSPDVGVAK LGSMTPGIRR SKKEDRIPQW GYDETKEFIA 60 LRAELEKDFM QTKRNKTLWE FIAGKMKEKG YRRNADQCKC KWKNLVNQYK GKETTFQPDY 120 EGKETSEVDN GKLPFFEELD AIFKDRAKNM DRMMLLEAEA GSRPHKKGKL GKPPSSDEDS 180 DDGNDEDNDS EDERINIGAR KSRKSDKGQR VTAEKFRANS MQEVLEGFFQ QQQRAEEHWH 240 DAVERREHEW HMREQEWRDA MEKLEQERIT REQGWHEREE QRRAREEARA QKRDELFAAL 300 LSKLAQEDGY * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024356666.1 | 1e-100 | trihelix transcription factor GT-3b-like isoform X2 | ||||
TrEMBL | A0A176VZJ2 | 1e-107 | A0A176VZJ2_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6W406 | 1e-107 | A0A2R6W406_MARPO; Uncharacterized protein | ||||
STRING | PP1S301_41V6.1 | 3e-99 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 7e-37 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0014s0052.1.p |