PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0014s0045.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 327aa    MW: 36374.3 Da    PI: 7.3693
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0014s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-18181235256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ +++keq   Lee F+ +++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Sphfalx0014s0045.1.p 181 RKKLRLSKEQSALLEESFKDHSTLNPKQKTALAKQLNLRPRQVEVWFQNRRARTK 235
                           778899***********************************************98 PP
2HD-ZIP_I/II126.61.1e-40181270191
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rlskeq++lLEesF+ +++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++d+l+een+rL+ke +eLr 
  Sphfalx0014s0045.1.p 181 RKKLRLSKEQSALLEESFKDHSTLNPKQKTALAKQLNLRPRQVEVWFQNRRARTKLKQMEVDCELLKTCCDNLTEENRRLQKELQELR- 268
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 el 91 
                           +l
  Sphfalx0014s0045.1.p 269 AL 270
                           55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-17168231IPR009057Homeodomain-like
PROSITE profilePS5007117.119177237IPR001356Homeobox domain
SMARTSM003893.1E-16179241IPR001356Homeobox domain
SuperFamilySSF466896.42E-18179245IPR009057Homeodomain-like
CDDcd000864.59E-17181238No hitNo description
PfamPF000461.4E-15181235IPR001356Homeobox domain
PROSITE patternPS000270212235IPR017970Homeobox, conserved site
CDDcd146860.00473230269No hitNo description
PfamPF021836.2E-11237271IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.7E-20237280IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MLVSEGIESL RVEMERMRAM ASSGRTTASL GLSVEFGGHG MPRKSPPVQL NLLPMRSPHS  60
DTSTDPARSS VSNPLSWQRL ASRINTGGRG HDDGEILETY SSHHHVDVVG VSPRADIDMN  120
QIPSETTDCD EAVVSSHTVS TICMKREREK LHVFDHLEQV DKGFDLSTRG GGSDDEDGTT  180
RKKLRLSKEQ SALLEESFKD HSTLNPKQKT ALAKQLNLRP RQVEVWFQNR RARTKLKQME  240
VDCELLKTCC DNLTEENRRL QKELQELRAL KVAPAPCVIA HDFYMPLPAT TLTMCPSCER  300
VATVHNPAHV FPKPAFSHFL QPSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179185TRKKLRL
2229237RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379716.11e-119homeobox-leucine zipper protein HAT4-like
TrEMBLA0A2R6WPH01e-122A0A2R6WPH0_MARPO; Uncharacterized protein
STRINGPP1S42_217V6.11e-118(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-67homeobox from Arabidopsis thaliana