PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0013s0294.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 835aa MW: 88000.5 Da PI: 6.3305

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0013s0294.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23	1.4e-07	745	788	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ r RR++ +++ L++l+P+ ++l+ +++L ++ eY++ Lq Sphfalx0013s0294.1.p 745 IAARTRREKFSDRIRILQTLVPNG-----ERLDTVSTLSQTLEYVRFLQ 788 5679****************96.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.76E-9	732	791	No hit	No description
PROSITE profile	PS50888	13.516	738	787	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.16E-11	741	795	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-11	744	793	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-8	745	791	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.0E-5	746	788	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence Send to blast
MVEALSRMPG SAPASFSTVA HFHSTEKHES PPAAATSIET ARSDHGTYSN SRGVELWSHI 60 AGGYTTGGRP AYSSNEIENL AGHITDQSSN RILGAHYSSY FPLSNGGGNG STKTTTITPN 120 SPPAAAAPQG SPFEKLGGTE SDNFQSGAQK SSASCKGGPV NVEPRSMYSE AVEAAAAAHL 180 EFRDDDGWNL SSLVNSCKVQ STAGTKSSSC LQAGSFVSGC AEANASAPGA VINVITAVAA 240 TCKSSFESGS TGSCSTPSLC VGSPATVTPA PPSFSSVPPA GTLESSLPTG NVVFDISGRG 300 HHAGSMTVNV EAEASGNVES DHSTSIESLM SFGECLESDR DSIVNFVDPN FWLHNEETVM 360 QDCTESVGLR LPPHSAGFLS QFSVEPASLV PKDASLDDTA NTSGPVYSAG IYESLEHGIV 420 QWKLPGIVRN ARAPTAAATV ANEAHLTSDY IHSLLLGGDE MANSATCMND KSKLGESSEQ 480 HLGRLGAKAD GAGTVVVMSA PDSQPCRMRW CDRPWTDETM QVPPTRCEGG IKQLIPRVSP 540 HMASTPQTFS PEGSPTSPLD FHKVSPQLQC LAPSMPHLRE VNARGSLTGG ADTDCTFLKE 600 LMIAVEANSS TRNKRSFEVM QQSSAANSGS AGGVGRLAGF RRPLPQPSPR FGSSSPPVQN 660 GLHMLQEIPA TSRPRENSAK FDPAALSALL YGIQQGSKEK QSSQTNSNPS LYALADYSPS 720 SLIGSSIPPK IQRRRHGTAT DPQSIAARTR REKFSDRIRI LQTLVPNGER LDTVSTLSQT 780 LEYVRFLQRQ VWEFYNGTTT TGDISVTSIQ PAAAEKWKGI VRDRHSNSQS TIAF*

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence Send to blast

MVEALSRMPG SAPASFSTVA HFHSTEKHES PPAAATSIET ARSDHGTYSN SRGVELWSHI  60
AGGYTTGGRP AYSSNEIENL AGHITDQSSN RILGAHYSSY FPLSNGGGNG STKTTTITPN  120
SPPAAAAPQG SPFEKLGGTE SDNFQSGAQK SSASCKGGPV NVEPRSMYSE AVEAAAAAHL  180
EFRDDDGWNL SSLVNSCKVQ STAGTKSSSC LQAGSFVSGC AEANASAPGA VINVITAVAA  240
TCKSSFESGS TGSCSTPSLC VGSPATVTPA PPSFSSVPPA GTLESSLPTG NVVFDISGRG  300
HHAGSMTVNV EAEASGNVES DHSTSIESLM SFGECLESDR DSIVNFVDPN FWLHNEETVM  360
QDCTESVGLR LPPHSAGFLS QFSVEPASLV PKDASLDDTA NTSGPVYSAG IYESLEHGIV  420
QWKLPGIVRN ARAPTAAATV ANEAHLTSDY IHSLLLGGDE MANSATCMND KSKLGESSEQ  480
HLGRLGAKAD GAGTVVVMSA PDSQPCRMRW CDRPWTDETM QVPPTRCEGG IKQLIPRVSP  540
HMASTPQTFS PEGSPTSPLD FHKVSPQLQC LAPSMPHLRE VNARGSLTGG ADTDCTFLKE  600
LMIAVEANSS TRNKRSFEVM QQSSAANSGS AGGVGRLAGF RRPLPQPSPR FGSSSPPVQN  660
GLHMLQEIPA TSRPRENSAK FDPAALSALL YGIQQGSKEK QSSQTNSNPS LYALADYSPS  720
SLIGSSIPPK IQRRRHGTAT DPQSIAARTR REKFSDRIRI LQTLVPNGER LDTVSTLSQT  780
LEYVRFLQRQ VWEFYNGTTT TGDISVTSIQ PAAAEKWKGI VRDRHSNSQS TIAF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	8e-16	APRATAXIN-like

Link Out ? help Back to Top
Phytozome	Sphfalx0013s0294.1.p