PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0013s0228.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | B3 | ||||||||
Protein Properties | Length: 1083aa MW: 121133 Da PI: 8.4126 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.5 | 7.4e-11 | 17 | 100 | 8 | 98 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +d+ + + l++p f+e+hg+ + ++tle ++g s +v l +++ l++G +eF + +g+++gD+v+F l+++s f v+k+ Sphfalx0013s0228.2.p 17 EDHRT-RFLRIPSLFMEQHGYR--IDDKVTLEGPTGFSCQVPL--LAFNNAFGLRSGFREFSDYHGIQSGDSVMFNLTRNSHF--VLKI 98 33333.458**********988..6779***************..77777799************************999999..7777 PP E- CS B3 97 fr 98 + Sphfalx0013s0228.2.p 99 YG 100 65 PP | |||||||
2 | B3 | 39 | 1.5e-12 | 368 | 455 | 7 | 98 |
.-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++ + ++g+ ++pk+f ++ +++++ l d gr+W v + + ++ + ++ GW +F++++ LkegD++v++l++ ++ + +v Sphfalx0013s0228.2.p 368 SKTYINTGCPIVPKRFSSKWlP---GRKTKILLVDMCGRKWPVVF--NPCGATARFQMGWFDFAQQQSLKEGDICVLELKNPNNINVFV 451 555666677899****988853...34568***************..****99*************************98778888888 PP EEE- CS B3 95 kvfr 98 +++r Sphfalx0013s0228.2.p 452 RILR 455 8877 PP | |||||||
3 | B3 | 38.9 | 1.5e-12 | 677 | 741 | 33 | 99 |
-SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 33 sktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +++ tl d+ g W+ +l +++s lt+GW+ F++++ L++gD++vF+++ + +e + +v++fr+ Sphfalx0013s0228.2.p 677 TTEATLVDSAGnlysAIWKPRL--NRGS----LTDGWSTFASDHCLQAGDVCVFEVT-NfTELTILVHIFRR 741 5678899999967767788888..7777....***********************76.55**********97 PP | |||||||
4 | B3 | 38.7 | 1.7e-12 | 829 | 913 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +v+++ l++p +fa+ + +++ + tl d+ g++W+ + +++ +r lt GW+ F a++++egD++v++l++ s+ ++v++f Sphfalx0013s0228.2.p 829 SVSQHFVLSIPMDFAKLWM--PRKLAKSTLVDSLGQTWTATW--TGNVRRPCLT-GWRTFSIAHHIQEGDVCVLELTDPSKLIFKVHIF 912 67888999*******6555..345668999************..**********.********************99879998888888 PP - CS B3 98 r 98 + Sphfalx0013s0228.2.p 913 S 913 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-16 | 3 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-15 | 5 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.06E-11 | 6 | 99 | No hit | No description |
SMART | SM01019 | 1.7E-5 | 8 | 102 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.559 | 9 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.8E-8 | 17 | 99 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-16 | 355 | 452 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-16 | 356 | 451 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.857 | 362 | 457 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-5 | 363 | 457 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-11 | 366 | 455 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.91E-13 | 367 | 455 | No hit | No description |
SuperFamily | SSF101936 | 3.53E-15 | 642 | 742 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-12 | 646 | 742 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.784 | 649 | 742 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0086 | 656 | 742 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.36E-11 | 663 | 740 | No hit | No description |
Pfam | PF02362 | 2.2E-10 | 676 | 741 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-14 | 817 | 913 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.982 | 821 | 913 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.33E-16 | 822 | 913 | No hit | No description |
SMART | SM01019 | 5.1E-5 | 824 | 915 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.35E-15 | 828 | 918 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.4E-10 | 829 | 913 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1083 aa Download sequence Send to blast |
MQLPAPSFIK LILDSNEDHR TRFLRIPSLF MEQHGYRIDD KVTLEGPTGF SCQVPLLAFN 60 NAFGLRSGFR EFSDYHGIQS GDSVMFNLTR NSHFVLKIYG KQGCQKTVFP GDMKDPDKHW 120 RTFNDSPRTF SKHPCCVLRD APDSHESDPP ASSDYRKKLR KRNPVQTEIA ADPCNKLQAA 180 GRKRKVPEPE EAEEEDASCC KRRNGGFTSG FREKPSGTGR SLSNGLGQQS EDEEKLEQMQ 240 QFLEQPELFF ERLPSPPPPP VVQQENPVPG KIPAPKTYNE EGKEEEDKRE QFNMLKSAAK 300 SSAESAGNIP RQQRRHQRET LQSDLKQQFQ QQYTSEELGA EENFNRQEMV RAAKAIENRN 360 PSAIIFMSKT YINTGCPIVP KRFSSKWLPG RKTKILLVDM CGRKWPVVFN PCGATARFQM 420 GWFDFAQQQS LKEGDICVLE LKNPNNINVF VRILRLEDYV ASMKGWRQSI MEGVVSNSLP 480 TRGQGKASQE DDVMVLEQTP TRAKRPAAKL PEFDPGCTSD DSCDKNEMIR AARLTAPKKT 540 REISNSSKEE KLASPLLDSL TESTMIAGYI ASLRNTGIAE SKEKMLSVQR GGKDSSNKDS 600 DTQKTGERVP AMKPQEGMPT DSRSRRSWAQ RNYKPVEWSK ALNSTNPHDA VILADLHVLL 660 NSTIPLPASL LGMPDFTTEA TLVDSAGNLY SAIWKPRLNR GSLTDGWSTF ASDHCLQAGD 720 VCVFEVTNFT ELTILVHIFR RDDDNNRLQS AFADGESLGR ISSASTSLQS KSIDREDKPS 780 PGDQFVEDHS KVALASQRHH PISEGDKCRG ILAAYKFKVK NPSFTVCYSV SQHFVLSIPM 840 DFAKLWMPRK LAKSTLVDSL GQTWTATWTG NVRRPCLTGW RTFSIAHHIQ EGDVCVLELT 900 DPSKLIFKVH IFSVLDIDVK KHSPNASQDW HQICDASGLT TPPGCSGKSP PPNQTKLPNL 960 AKCLRGSTLL ARTSRKTAIA KALYKAAIHR KKDDARRQQS VDLATKAAIT DFVAQEQNPS 1020 TTSHTLHEDC CLPYYGKGVQ AFDEAPKPSQ PVGWNTRMHA SKLLGSKCPY NLEMPEEEEE 1080 SQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 161 | RKKLRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-14 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0013s0228.2.p |