PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0013s0228.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 1105aa    MW: 123452 Da    PI: 8.2295
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0013s0228.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.57.6e-1117100898
                           -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                    B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           +d+ + + l++p  f+e+hg+    + ++tle ++g s +v l      +++ l++G +eF + +g+++gD+v+F l+++s f  v+k+
  Sphfalx0013s0228.1.p  17 EDHRT-RFLRIPSLFMEQHGYR--IDDKVTLEGPTGFSCQVPL--LAFNNAFGLRSGFREFSDYHGIQSGDSVMFNLTRNSHF--VLKI 98 
                           33333.458**********988..6779***************..77777799************************999999..7777 PP

                           E- CS
                    B3  97 fr 98 
                           + 
  Sphfalx0013s0228.1.p  99 YG 100
                           65 PP
2B3391.5e-12390477798
                           .-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                    B3   7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                           ++ + ++g+ ++pk+f ++       +++++ l d  gr+W v +  + ++ +  ++ GW +F++++ LkegD++v++l++ ++ + +v
  Sphfalx0013s0228.1.p 390 SKTYINTGCPIVPKRFSSKWlP---GRKTKILLVDMCGRKWPVVF--NPCGATARFQMGWFDFAQQQSLKEGDICVLELKNPNNINVFV 473
                           555666677899****988853...34568***************..****99*************************98778888888 PP

                           EEE- CS
                    B3  95 kvfr 98 
                           +++r
  Sphfalx0013s0228.1.p 474 RILR 477
                           8877 PP
3B338.91.6e-126997633399
                           -SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                    B3  33 sktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                           +++ tl d+ g      W+ +l  +++s    lt+GW+ F++++ L++gD++vF+++ + +e + +v++fr+
  Sphfalx0013s0228.1.p 699 TTEATLVDSAGnlysAIWKPRL--NRGS----LTDGWSTFASDHCLQAGDVCVFEVT-NfTELTILVHIFRR 763
                           5678899999967767788888..7777....***********************76.55**********97 PP
4B338.71.8e-12851935998
                           HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                    B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           +v+++  l++p +fa+  +  +++  + tl d+ g++W+ +   +++ +r  lt GW+ F  a++++egD++v++l++ s+  ++v++f
  Sphfalx0013s0228.1.p 851 SVSQHFVLSIPMDFAKLWM--PRKLAKSTLVDSLGQTWTATW--TGNVRRPCLT-GWRTFSIAHHIQEGDVCVLELTDPSKLIFKVHIF 934
                           67888999*******6555..345668999************..**********.********************99879998888888 PP

                           - CS
                    B3  98 r 98 
                           +
  Sphfalx0013s0228.1.p 935 S 935
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-163104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-155104IPR015300DNA-binding pseudobarrel domain
CDDcd100175.20E-11699No hitNo description
SMARTSM010191.7E-58102IPR003340B3 DNA binding domain
PROSITE profilePS508639.5599102IPR003340B3 DNA binding domain
PfamPF023626.9E-81799IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-16377474IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-16378473IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.857384479IPR003340B3 DNA binding domain
SMARTSM010191.7E-5385479IPR003340B3 DNA binding domain
PfamPF023625.3E-11388477IPR003340B3 DNA binding domain
CDDcd100172.99E-13389477No hitNo description
SuperFamilySSF1019363.73E-15664764IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-12668764IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.784671764IPR003340B3 DNA binding domain
SMARTSM010190.0086678764IPR003340B3 DNA binding domain
CDDcd100171.39E-11685762No hitNo description
PfamPF023622.2E-10698763IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-14839935IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.982843935IPR003340B3 DNA binding domain
CDDcd100173.43E-16844935No hitNo description
SMARTSM010195.1E-5846937IPR003340B3 DNA binding domain
SuperFamilySSF1019361.39E-15850940IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-10851935IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1105 aa     Download sequence    Send to blast
MQLPAPSFIK LILDSNEDHR TRFLRIPSLF MEQHGYRIDD KVTLEGPTGF SCQVPLLAFN  60
NAFGLRSGFR EFSDYHGIQS GDSVMFNLTR NSHFVLKIYG KQGCQKTVFP GDMKDPDKHW  120
RTFNDSPRTF SKHPCCVLRD APDSHESDPP ASSDYRKKLR KRNPVQTEIA ADPCNKLQAA  180
GRKRKVPEPE EAEEEDASCC KRRNGGFTSG FREKPSGTGR SLSNGLGQQS EDEEKLEQMQ  240
QFLEQPELFF ERLPSPPPPP VVQQENPVPG KIPAPKTYNE EGKEEEDKRE QFNMLKSAAK  300
SSAESAGNIP RQQRRHQRET LQSDLKQQFQ QQYTSEEIPE GLQSEAESLT MFSGPSQTQL  360
GAEENFNRQE MVRAAKAIEN RNPSAIIFMS KTYINTGCPI VPKRFSSKWL PGRKTKILLV  420
DMCGRKWPVV FNPCGATARF QMGWFDFAQQ QSLKEGDICV LELKNPNNIN VFVRILRLED  480
YVASMKGWRQ SIMEGVVSNS LPTRGQGKAS QEDDVMVLEQ TPTRAKRPAA KLPEFDPGCT  540
SDDSCDKNEM IRAARLTAPK KTREISNSSK EEKLASPLLD SLTESTMIAG YIASLRNTGI  600
AESKEKMLSV QRGGKDSSNK DSDTQKTGER VPAMKPQEGM PTDSRSRRSW AQRNYKPVEW  660
SKALNSTNPH DAVILADLHV LLNSTIPLPA SLLGMPDFTT EATLVDSAGN LYSAIWKPRL  720
NRGSLTDGWS TFASDHCLQA GDVCVFEVTN FTELTILVHI FRRDDDNNRL QSAFADGESL  780
GRISSASTSL QSKSIDREDK PSPGDQFVED HSKVALASQR HHPISEGDKC RGILAAYKFK  840
VKNPSFTVCY SVSQHFVLSI PMDFAKLWMP RKLAKSTLVD SLGQTWTATW TGNVRRPCLT  900
GWRTFSIAHH IQEGDVCVLE LTDPSKLIFK VHIFSVLDID VKKHSPNASQ DWHQICDASG  960
LTTPPGCSGK SPPPNQTKLP NLAKCLRGST LLARTSRKTA IAKALYKAAI HRKKDDARRQ  1020
QSVDLATKAA ITDFVAQEQN PSTTSHTLHE DCCLPYYGKG VQAFDEAPKP SQPVGWNTRM  1080
HASKLLGSKC PYNLEMPEEE EESQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161RKKLRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-14B3 family protein