PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0013s0106.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 230aa MW: 25746.8 Da PI: 7.7139 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.1e-18 | 84 | 136 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +ftk q++ Le F+ + p+ ++++LA++lg++ rqV +WFqNrRa+ k Sphfalx0013s0106.1.p 84 KLRFTKPQVRLLEHTFQTLQRPNCYQKADLARELGVQPRQVDIWFQNRRARGK 136 568************************************************88 PP | |||||||
2 | HD-ZIP_I/II | 93.3 | 2.6e-30 | 83 | 163 | 2 | 82 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 +k+r++k qv+lLE++F++ ++ + +K++lareLg+qprqv++WFqnrRAR k+k +++d++ L+++++ l +en++L+ Sphfalx0013s0106.1.p 83 QKLRFTKPQVRLLEHTFQTLQRPNCYQKADLARELGVQPRQVDIWFQNRRARGKAKATDSDCDILRQRCQDLIAENHQLNL 163 79***************************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.601 | 78 | 138 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-14 | 80 | 142 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.18E-16 | 81 | 136 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.2E-16 | 84 | 136 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-18 | 85 | 141 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.46E-14 | 86 | 134 | No hit | No description |
PRINTS | PR00031 | 5.0E-6 | 109 | 118 | IPR000047 | Helix-turn-helix motif |
PRINTS | PR00031 | 5.0E-6 | 118 | 134 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MADRYNNIFT TINSLALNAR QTDGAGGCLC GGRESPYSAA ASSEIQREVE FGRVLHCHDH 60 VHRGGSDGSC PRDMNDEEEG SSQKLRFTKP QVRLLEHTFQ TLQRPNCYQK ADLARELGVQ 120 PRQVDIWFQN RRARGKAKAT DSDCDILRQR CQDLIAENHQ LNLLIQSERM SYADSLLYNN 180 ARVQEQQQLS TDQVGTDQLS RSASSGHPTV QIQMILCNSC KKLKSLPPV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024396326.1 | 5e-53 | homeobox-leucine zipper protein HOX17-like | ||||
Refseq | XP_024396327.1 | 5e-53 | homeobox-leucine zipper protein HOX17-like | ||||
TrEMBL | A0A2K1JE05 | 1e-51 | A0A2K1JE05_PHYPA; Uncharacterized protein | ||||
TrEMBL | A9U306 | 8e-52 | A9U306_PHYPA; Predicted protein (Fragment) | ||||
STRING | PP1S454_12V6.1 | 2e-52 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-21 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0013s0106.1.p |