PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0013s0065.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GATA
Protein Properties Length: 366aa    MW: 40045.4 Da    PI: 6.8231
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0013s0065.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA504.1e-16264300135
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++Cg  +  Tp++Rrgp+g++tLCnaCGl+++ kgl
  Sphfalx0013s0065.2.p 264 CVHCGIGEksTPMMRRGPSGPRTLCNACGLMWANKGL 300
                           ****865556***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.929120155IPR010399Tify domain
SMARTSM009792.7E-9120155IPR010399Tify domain
PfamPF062006.7E-13122154IPR010399Tify domain
PfamPF062033.5E-15188230IPR010402CCT domain
PROSITE profilePS5101712.957188230IPR010402CCT domain
SMARTSM004018.0E-12258311IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.972258314IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-11261307No hitNo description
Gene3DG3DSA:3.30.50.101.7E-15263305IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.6E-14264300IPR000679Zinc finger, GATA-type
PROSITE patternPS003440264291IPR000679Zinc finger, GATA-type
CDDcd002026.83E-15264306No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSETDYLAHS SQALHAHHIG QPPHNVTHGI DLRNPQGHLH TQPHIDANAQ VQARAQGEAQ  60
GDSNRRHGHH VHNGHGMHHS QENGAEEHDD DPGDEEGLDE AVMHSDGGQE EGPPQALSVR  120
SQGSTQLTLS YQSEVYVFDT VPPEKVQAVL LLLGGREIPP GMSGNNMSYH NHHKGLAELP  180
ARMDMPHRLA SLTRFREKRK ERCFDKKIRY SVRAEVAQRM QRKKGQFASA RRAGEEAGAV  240
ASWDGTAVPA QAAGPMGVQS DVMCVHCGIG EKSTPMMRRG PSGPRTLCNA CGLMWANKGL  300
LRDLSKNLPA SQVTQQPHTI QQEETVLQQQ KPIARVQQVL DHSSPPVNES PQETQGADVG  360
YEKEQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395439.11e-128GATA transcription factor 28-like isoform X1
RefseqXP_024395440.11e-128GATA transcription factor 28-like isoform X1
RefseqXP_024395441.11e-128GATA transcription factor 28-like isoform X1
RefseqXP_024395442.11e-128GATA transcription factor 28-like isoform X1
RefseqXP_024395443.11e-128GATA transcription factor 28-like isoform X1
RefseqXP_024395444.11e-128GATA transcription factor 28-like isoform X2
SwissprotQ8GXL71e-75GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A4D6QHA31e-128A0A4D6QHA3_9BRYO; TIFY motif family protein
STRINGPP1S69_103V6.21e-127(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-71ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]