PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0012s0241.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 564aa    MW: 63490.4 Da    PI: 5.4408
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0012s0241.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.22.8e-15167248282
              trihelix   2 WtkqevlaLiearremeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                           Wt +e+l L+ea+++ ++ ++ +k    +++ +W++v+++++++ ++rs +qC+ kwen   +++k+++ e +r++ ++   +yf
  Sphfalx0012s0241.1.p 167 WTLNETLILLEAKKREKDLFSGTKrnsvSAEEKWKKVAEFCWSKDVQRSKEQCRFKWENTMPDFRKVRDYEDDRAECDR---SYF 248
                           **************9999999544345599******************************************9954443...244 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.399159227IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.5E-4160227IPR009057Homeodomain-like
PfamPF138375.1E-9167249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MRMRKMERSL AHITEKRENW EGECNGSSTL QVLGAPSTSL IGELPLTANG VWRPQQQQHH  60
ENLEYLGSDI QRAHLSLQGR NMIPPERELV VLLETDQQRR SGGGAGRLGP SEEEEDVEEA  120
TKEGVGEHSV ENRGILVEEA EEVGHLYDHA DKGSNKPEDR VYRPGVWTLN ETLILLEAKK  180
REKDLFSGTK RNSVSAEEKW KKVAEFCWSK DVQRSKEQCR FKWENTMPDF RKVRDYEDDR  240
AECDRSYFEM ESWQRKQSNL PPNLNKELYM MMDDLLVRRA LRKGGTDSTK KKARGKKEHA  300
QSEQTSIAVV AAPSSAERVP EGIVDQNTAI VIDDIIAAPL ESSSGGPQQS RVLLETRGQT  360
ISQAKEGTRK RRKKDQDFKE PKMELVVVQE DREVPEKSSL PILLPEVEER NCALDTTRLN  420
AEEESPLLAN VPTQIPEVQT VRVECSQEVC PIETNSFSLK AEEKRIPAKD RKSLGRAGGR  480
KSKVTLTDPC GQPKHDIAVA VEADKSVDGL HTDEDKEETR HQQLLALERE KLAANKEVMA  540
MFASALNNMA TAVSKVADLL QQC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368374RKRRKKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-21Trihelix family protein