PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0012s0225.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C2H2

Protein Properties

Length: 562aa MW: 64351.2 Da PI: 6.8764

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0012s0225.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	173	192	3	22
ETTTTEEESSHHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHirt 22 C+ Cg sF + + +H+r+ Sphfalx0012s0225.1.p 173 CSTCGPSFEDMAKYSSHLRK 192 ******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02992	9.4E-59	11	213	IPR004242	Transposon, En/Spm-like
PROSITE profile	PS50157	8.663	171	203	IPR007087	Zinc finger, C2H2
Pfam	PF13960	1.2E-36	414	528	IPR025452	Domain of unknown function DUF4218

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MYRCIDLVEL MVWHKEHRSE PSVMRLPVDS PAHKHVESTW PEFERDPRNV RLGLASDGVS 60 PHSLGGKGRP TSVWPVVVMN YNLPPWLSMK KGFLLLSLII PGPSKVKNLD TYLALVVDEF 120 KTLWDGVWAY DGRKTTGGIP RVFKLRAICM WTMHDYPGFG FVSGLQTQGY KACSTCGPSF 180 EDMAKYSSHL RKIVYLGHTK FLPLGHDMRS DPLLFSSFDM PYGDDRDIPE VTTFAYWRDV 240 ANKVIDLNDS MVFEGCGLTR WGILNSLPYW GELKIRHLLD PMHIEGNVGK AIIKQLYGEK 300 DSNFREACED FERHPDVWIT IDPNTGIEER PSAPWTLTTQ ERKDFRNRIG EMRFPTGLNF 360 NGKGYGANLQ KAFGRDDDHK WPRYLKTHDY HRLLQHILPV AIIGLASAEV QDVIWSLGNL 420 LRWVCSKELF VEEIPRMRVI AAEVVCKLEK AFPPSLFDCQ VHLLVHLVDE IAIAGPVHCR 480 WMYWLERYMA VLKGYVRNHA RVEGSMAAGQ LAAESMFYCT NILATIDPSC PHVWMEEREE 540 EEDRLTGAIK TRMLLPTELI Q*

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MYRCIDLVEL MVWHKEHRSE PSVMRLPVDS PAHKHVESTW PEFERDPRNV RLGLASDGVS  60
PHSLGGKGRP TSVWPVVVMN YNLPPWLSMK KGFLLLSLII PGPSKVKNLD TYLALVVDEF  120
KTLWDGVWAY DGRKTTGGIP RVFKLRAICM WTMHDYPGFG FVSGLQTQGY KACSTCGPSF  180
EDMAKYSSHL RKIVYLGHTK FLPLGHDMRS DPLLFSSFDM PYGDDRDIPE VTTFAYWRDV  240
ANKVIDLNDS MVFEGCGLTR WGILNSLPYW GELKIRHLLD PMHIEGNVGK AIIKQLYGEK  300
DSNFREACED FERHPDVWIT IDPNTGIEER PSAPWTLTTQ ERKDFRNRIG EMRFPTGLNF  360
NGKGYGANLQ KAFGRDDDHK WPRYLKTHDY HRLLQHILPV AIIGLASAEV QDVIWSLGNL  420
LRWVCSKELF VEEIPRMRVI AAEVVCKLEK AFPPSLFDCQ VHLLVHLVDE IAIAGPVHCR  480
WMYWLERYMA VLKGYVRNHA RVEGSMAAGQ LAAESMFYCT NILATIDPSC PHVWMEEREE  540
EEDRLTGAIK TRMLLPTELI Q*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Link Out ? help Back to Top
Phytozome	Sphfalx0012s0225.1.p