PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0012s0197.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 477aa    MW: 51957.2 Da    PI: 4.5418
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0012s0197.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.73.9e-1565114255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++ GVr+++ +grWvAeI+d +   ++ r +lg+f  ae+Aa+a+++a+  l+g
  Sphfalx0012s0197.1.p  65 RFLGVRQRP-SGRWVAEIKDTT---QKIRLWLGTFNCAEDAARAYDEAAWMLRG 114
                           577******.7*********32...35*********************976665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.94E-2764121No hitNo description
Gene3DG3DSA:3.30.730.108.2E-2665121IPR001471AP2/ERF domain
SMARTSM003807.6E-3265128IPR001471AP2/ERF domain
PROSITE profilePS5103219.01965122IPR001471AP2/ERF domain
PRINTSPR003673.3E-66677IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1866122IPR016177DNA-binding domain
PfamPF008472.2E-1068114IPR001471AP2/ERF domain
PRINTSPR003673.3E-688104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEQQQQWQQV TNCGSVLELK HAASDSVKGR KEERESVAAR GASSLKKNSS YSMANCRGRS  60
RSNKRFLGVR QRPSGRWVAE IKDTTQKIRL WLGTFNCAED AARAYDEAAW MLRGSNTRTN  120
FLLPPPQAPS SSSANNFSLL PSKSARLLHR RRSSAAAAKL ESTEEADAAA AHVAAISAAA  180
AAAAASTKEV DSSETDDSLT SAAFEVVPTT PNALKVAITS GASETEDSLV AGAERELSYR  240
SSSSSNTSSA SDMISDSTWS YSSTEESLTI FPEMDHKEWL KAFSATEEQQ QYLEEGGAAM  300
MSDSGCSSSY RSMEESLMIS FPEMPGNRVW LEPIRRERQY LETKPLQEDD DETSTGFVAT  360
AAEDSSDELQ YYTTSFDFSA TDLEPLEKVP DTSSLEDPAL SDDTMLLNEH FLRMKEDTIL  420
GAGAWNQKLL EYAEEDKILG AGAWNQSCLK YAKEDNILGA GALNHKVSST SKSCIL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-19related to AP2 11