PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0012s0112.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

MYB_related

Protein Properties

Length: 718aa MW: 81523 Da PI: 5.4729

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0012s0112.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.8	1.4e-09	323	370	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqk 46 r rW++ E++ l +a +++G+g+Wk I + + +R+ q+k++++ Sphfalx0012s0112.1.p 323 RRRWSAVEEDALRRALQRFGPGCWKEIKENEPalANRSTVQIKDKFRL 370 78*******************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.09E-9	322	373	IPR009057	Homeodomain-like
SMART	SM00717	3.5E-7	322	374	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.76	323	372	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.3E-10	323	369	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-8	323	369	IPR001005	SANT/Myb domain
CDD	cd11660	1.23E-15	324	372	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence Send to blast
MIHHAEFDVV AFWKKSIGVG LVLGIFASSC KTGEEAIYLL RQYFATLFDR VDYQVICRTP 60 DLGESFAQLL CLVEEKAVDE ELGYPHGYAK LCRHAAAQLQ GLLTPFTEGP PQRFLPYAPQ 120 TEDFVKLKEW DSLFPVVAEG DRDPPNARKH AEELWLQLDH LGNAGFEPAK FRVDAYGNVV 180 YWNADPSSPL AWEVDHWYPH SRGGKTVVSN LRIVQWQANQ RKKNRLEFLV PWWDLQHGVS 240 INQFLSAFAS KNADFREHVG ECRPWPQEFR EKKALFGLAA AAIVSPMTDN NDIVKIGHIS 300 RAVFASSDMV TATGNPASGT PPRRRWSAVE EDALRRALQR FGPGCWKEIK ENEPALANRS 360 TVQIKDKFRL MRGDWQIGKE NIAISTAPNG QSEHGNRQSA ATVNLQKELR VKILREEEKR 420 EKEQDVAQLE ETVITLRQQN EKERLALLEF EDVLRKHKQR VEKQRRWAET QSSYRLCLER 480 MIRDTMHQSL AYKEQARLNQ AACNALMARL DCQKAICDAA EKDLIQHHAH REALAATGGT 540 AMKESGHMSG LRGKDIVDVS SCVSLFETNE EHEGEEVTEP DNDRDCWNDG EDEKANEVHK 600 LQMQLCQSQA LHQQLQQQIE QEYLNNYLVE DGLGLRGRPK EAVNASELTL YLDATAQDGE 660 DEWVQLPESQ DGCQGETPIK AEVIMRGTER LIYIDFCTPL IAVWLLLITL SFVSPSL*

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence Send to blast

MIHHAEFDVV AFWKKSIGVG LVLGIFASSC KTGEEAIYLL RQYFATLFDR VDYQVICRTP  60
DLGESFAQLL CLVEEKAVDE ELGYPHGYAK LCRHAAAQLQ GLLTPFTEGP PQRFLPYAPQ  120
TEDFVKLKEW DSLFPVVAEG DRDPPNARKH AEELWLQLDH LGNAGFEPAK FRVDAYGNVV  180
YWNADPSSPL AWEVDHWYPH SRGGKTVVSN LRIVQWQANQ RKKNRLEFLV PWWDLQHGVS  240
INQFLSAFAS KNADFREHVG ECRPWPQEFR EKKALFGLAA AAIVSPMTDN NDIVKIGHIS  300
RAVFASSDMV TATGNPASGT PPRRRWSAVE EDALRRALQR FGPGCWKEIK ENEPALANRS  360
TVQIKDKFRL MRGDWQIGKE NIAISTAPNG QSEHGNRQSA ATVNLQKELR VKILREEEKR  420
EKEQDVAQLE ETVITLRQQN EKERLALLEF EDVLRKHKQR VEKQRRWAET QSSYRLCLER  480
MIRDTMHQSL AYKEQARLNQ AACNALMARL DCQKAICDAA EKDLIQHHAH REALAATGGT  540
AMKESGHMSG LRGKDIVDVS SCVSLFETNE EHEGEEVTEP DNDRDCWNDG EDEKANEVHK  600
LQMQLCQSQA LHQQLQQQIE QEYLNNYLVE DGLGLRGRPK EAVNASELTL YLDATAQDGE  660
DEWVQLPESQ DGCQGETPIK AEVIMRGTER LIYIDFCTPL IAVWLLLITL SFVSPSL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024392370.1	0.0	uncharacterized protein LOC112290409
TrEMBL	A0A2K1JMF0	0.0	A0A2K1JMF0_PHYPA; Uncharacterized protein
STRING	PP1S305_38V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Sphfalx0012s0112.1.p