PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0012s0069.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 694aa    MW: 78067.4 Da    PI: 6.9917
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0012s0069.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.35.1e-17493580998
                           HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                    B3   9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                            + ++g  v+pk+f ++   +   e+k + led++g++W v +  + ++ +    l++GW+ F+++++LkegD +v+++++  + +l+v
  Sphfalx0012s0069.1.p 493 TYITRGYTVVPKSFGRKWlPL---EKKAILLEDTTGQTWPVVY--NPSKHHitGHLGRGWRTFAQDKHLKEGDLCVLEMKSPYSNNLFV 576
                           556778889******999533...3468***************..555555446699*********************98889999*** PP

                           EEE- CS
                    B3  95 kvfr 98 
                           ++fr
  Sphfalx0012s0069.1.p 577 HIFR 580
                           **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.051172IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-10174IPR015300DNA-binding pseudobarrel domain
CDDcd100172.28E-7170No hitNo description
SuperFamilySSF1019361.16E-11274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-18482580IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-17482580IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.788485582IPR003340B3 DNA binding domain
SMARTSM010190.0017487582IPR003340B3 DNA binding domain
CDDcd100172.41E-17489580No hitNo description
PfamPF023621.3E-15494580IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MEEHGYRIDD TLTLEGPTGY TCQVPLAFQN GRHGLSAGFG AFLRYHGLEA GDYAIFTLTA  60
NSHLVVKIYS KHGCQKTEFP GDVNEPKSLN SHLSKDLVDG RRLGKRRNRR VAISSKVAGR  120
KHRKVNQEQQ ADESGSRRGE NCSFDQDLLK NGSFKYGTEH HETGGSGVQE EKFGSKHHEN  180
GGWGVQEEEL GSEHHENGGF GVQEEELGSE HHENGELDIQ GKELGSEHHE NGELDVQGKE  240
LGCEHDEIGG FGVKEEEKLD LPERIQQLVE QSSLFFEELE KHLLVEKIAR NNPLALSDER  300
KDDYDRNPAR TILAWIRPEK HHSEEVSPSP HQENCLHSPK KNTSVRVSGR LRWEHEVSGN  360
SVLNSKTATA MAQGWSVRPK RTCSRLFDPY TSGVENGNNR GHNVQKPGSE AIDPALNPGQ  420
NPRYPSLSDQ QRWHTPQVQR ATESEQKNLR SDCHPSLRVR PPEENLKRKE MLEAAEALKA  480
KTYPSAIMVM SRTYITRGYT VVPKSFGRKW LPLEKKAILL EDTTGQTWPV VYNPSKHHIT  540
GHLGRGWRTF AQDKHLKEGD LCVLEMKSPY SNNLFVHIFR FADYMVSHST EGHVSHTLEP  600
SRHGNGSYKD NLLMEQAHLT TKPPRCEQAI LGSSCKKRDM TRSEELNAPR SSETSSSSSE  660
EGPSESNWAF NSSQTSIFQS EKYGHCRIYR GGT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101110RLGKRRNRRV