PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0011s0159.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | LFY | ||||||||
Protein Properties | Length: 242aa MW: 27099.1 Da PI: 6.964 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 111 | 1.8e-34 | 7 | 131 | 38 | 153 |
FLO_LFY 38 eaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrlee.... 122 +a+++ a+++ r+l+elfk+yG+r +t+a i+++GftvstL++mkd+e+d ++ks++e ++l+ll+Ge++Gik+avra+rr l++ Sphfalx0011s0159.1.p 7 KAMTTLASKESRRLKELFKDYGLRPATIALISKMGFTVSTLIHMKDDEVDFVIKSIMEDYHLELLIGEQFGIKSAVRAKRRLLDQelew 95 345556677799*********************************************************************99997777 PP FLO_LFY 123 ..eeaekkrrkll.sedeetaldalsqeg..lseep 153 +a+++rr ++ s + +al s eg l +ep Sphfalx0011s0159.1.p 96 qrLHANSRRRCTVdSFASVSALALPSIEGhsLVREP 131 763344555544423333445555555652244444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 1.1E-24 | 6 | 111 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSSNNPKAMT TLASKESRRL KELFKDYGLR PATIALISKM GFTVSTLIHM KDDEVDFVIK 60 SIMEDYHLEL LIGEQFGIKS AVRAKRRLLD QELEWQRLHA NSRRRCTVDS FASVSALALP 120 SIEGHSLVRE PSRVQKRNHM PPELLTQRLP LLSDEVPMLG QGDTPLSMTG LVALADVSSD 180 GDIDSGWENF HPQNQKLKRK WISSGPEEIV DDRLKDMHLV PGLLEGFMKN GHSTGFCEFT 240 G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ude_A | 3e-21 | 12 | 98 | 3 | 88 | GINLFY PROTEIN |
4ude_B | 3e-21 | 12 | 98 | 3 | 88 | GINLFY PROTEIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 2e-13 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0011s0159.1.p |