PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0011s0113.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | CO-like | ||||||||
Protein Properties | Length: 471aa MW: 52042.2 Da PI: 7.0805 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.2 | 3.5e-08 | 33 | 75 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ ++ ++++++C ++ +lCe+C H+ H++v Sphfalx0011s0113.1.p 33 RACDVCGVQRAHWYCAADEAFLCENCDGGVHNAnavalrHERV 75 78******99******************99*768888888876 PP | |||||||
2 | CCT | 64.9 | 2.3e-22 | 423 | 465 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+a++lRYkeKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk+ Sphfalx0011s0113.1.p 423 RKARVLRYKEKRRTRLFSKKIRYHVRKLNAERRPRMKGRFVKR 465 9****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 8.0E-9 | 30 | 77 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.381 | 30 | 77 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.2E-7 | 33 | 75 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.50E-6 | 33 | 77 | No hit | No description |
Pfam | PF06203 | 1.0E-16 | 423 | 465 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.745 | 423 | 465 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MTMKSQCTEA RKIRSSNSSA ATAAMAIAGR SSRACDVCGV QRAHWYCAAD EAFLCENCDG 60 GVHNANAVAL RHERVRLAPN GTPTAKLPRH SSASQCHLSK SSSKRSRSSR PHAHDRNPLS 120 KLCKSSKNSE RVHDGQKLDL KVELVDQFYE LGDEPVEELF QGSPRLDEGK QFAVPDFLQD 180 SLDSGVDIDC TVSLIIGNSS SSAGFLGGDI PRLVIDEAFD AFAVDYGLNF DVAIGGAGSD 240 DALDAGNHGR DGDAEGRGCF NSMTSSLGCG SSFSSRVDRR QQSWPDLERI DPARIFASTS 300 KEEEDVTKQQ LLQRPEKIKK DAEEILKCSL EDLRHVPSLR LDYEDVLNAW SDRGALWTDA 360 KLNPQTVPGL EFFNSDAPNP GCTDICIVPD ILMSLQQEQL DVDSVRETGE DGSPWTNEPT 420 GPRKARVLRY KEKRRTRLFS KKIRYHVRKL NAERRPRMKG RFVKRMHLSS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 433 | 449 | RRTRLFSKKIRYHVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73870.1 | 5e-24 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0011s0113.1.p |