PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0011s0113.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CO-like
Protein Properties Length: 471aa    MW: 52042.2 Da    PI: 7.0805
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0011s0113.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.23.5e-083375440
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                          r C+ ++ ++++++C  ++ +lCe+C    H+       H++v
  Sphfalx0011s0113.1.p 33 RACDVCGVQRAHWYCAADEAFLCENCDGGVHNAnavalrHERV 75
                          78******99******************99*768888888876 PP
2CCT64.92.3e-22423465143
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                           R+a++lRYkeKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk+
  Sphfalx0011s0113.1.p 423 RKARVLRYKEKRRTRLFSKKIRYHVRKLNAERRPRMKGRFVKR 465
                           9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.0E-93077IPR000315B-box-type zinc finger
PROSITE profilePS5011910.3813077IPR000315B-box-type zinc finger
PfamPF006432.2E-73375IPR000315B-box-type zinc finger
CDDcd000212.50E-63377No hitNo description
PfamPF062031.0E-16423465IPR010402CCT domain
PROSITE profilePS5101715.745423465IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MTMKSQCTEA RKIRSSNSSA ATAAMAIAGR SSRACDVCGV QRAHWYCAAD EAFLCENCDG  60
GVHNANAVAL RHERVRLAPN GTPTAKLPRH SSASQCHLSK SSSKRSRSSR PHAHDRNPLS  120
KLCKSSKNSE RVHDGQKLDL KVELVDQFYE LGDEPVEELF QGSPRLDEGK QFAVPDFLQD  180
SLDSGVDIDC TVSLIIGNSS SSAGFLGGDI PRLVIDEAFD AFAVDYGLNF DVAIGGAGSD  240
DALDAGNHGR DGDAEGRGCF NSMTSSLGCG SSFSSRVDRR QQSWPDLERI DPARIFASTS  300
KEEEDVTKQQ LLQRPEKIKK DAEEILKCSL EDLRHVPSLR LDYEDVLNAW SDRGALWTDA  360
KLNPQTVPGL EFFNSDAPNP GCTDICIVPD ILMSLQQEQL DVDSVRETGE DGSPWTNEPT  420
GPRKARVLRY KEKRRTRLFS KKIRYHVRKL NAERRPRMKG RFVKRMHLSS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1433449RRTRLFSKKIRYHVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.15e-24B-box type zinc finger protein with CCT domain