PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0011s0074.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 398aa    MW: 44144.2 Da    PI: 5.3556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0011s0074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.8e-12285327754
                           HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           + Er+RR+++N+++  Lr l+Pk +      K++Ka+iL  A++Y+ +L
  Sphfalx0011s0074.1.p 285 ASERKRRKKLNDSLYSLRGLVPKiS------KMDKASILGDAIDYVIEL 327
                           67*********************66......**************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.396278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-12278331No hitNo description
SuperFamilySSF474592.88E-15279344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-15284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-15285345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9285327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MFQNQFYFLA GSPGETLEPF TTENDEASNM YEAAGTYDGL AQVIGVTSMP INPLQADRHR  60
DMRGGSCNVR EQEVRILETN TPRQTYQEPE LLKTSTRCED PLWTLEGLYS APTNSLPIAY  120
EEHGVHASVF SFATIDSKVD HDQMWDWQEL LNEFQAPPEQ RTEGNIVTST TSAKIRIRES  180
TSGLQEKFRK HEYEVVVTNN GSQDHPHESN SKSSEVDGAS NLVVQDHRTV SSPPQGVESS  240
REISGVTTRP PTNSPEQLRE AVLHPKKGIR RFYSTGCKTV SKNLASERKR RKKLNDSLYS  300
LRGLVPKISK MDKASILGDA IDYVIELKKE VMDIETEVAA LEQKSSARLI GVRDPVSNIS  360
DCSGINLGKF VAESARTMES GGFPGSTSQS LQVQIKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286293ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.11e-19bHLH family protein