PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0010s0187.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 304aa    MW: 33949.1 Da    PI: 6.6745
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0010s0187.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.7e-18176230256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ +++keq   Lee F+ +++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Sphfalx0010s0187.1.p 176 RKKLRLSKEQSALLEESFKDHSTLNPKQKNALAKELNLRPRQVEVWFQNRRARTK 230
                           778899***********************************************98 PP
2HD-ZIP_I/II125.13.3e-40176264190
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rlskeq++lLEesF+ +++L+p++K++la+eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr +++l+een+rL+ke +eLr 
  Sphfalx0010s0187.1.p 176 RKKLRLSKEQSALLEESFKDHSTLNPKQKNALAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEMLKRYCENLTEENRRLQKELQELR- 263
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 e 90 
                           +
  Sphfalx0010s0187.1.p 264 A 264
                           4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-18161233IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-18162226IPR009057Homeodomain-like
PROSITE profilePS5007117.313172232IPR001356Homeobox domain
SMARTSM003891.1E-15174236IPR001356Homeobox domain
PfamPF000462.3E-15176230IPR001356Homeobox domain
CDDcd000863.48E-16176233No hitNo description
PROSITE patternPS000270207230IPR017970Homeobox, conserved site
PfamPF021831.0E-10232266IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.9E-21232275IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MLSLEGKESM RLEMERMKEE MTTNFGFSVE IGAPYGGPRQ SPPVQLELLP MRSSTHESET  60
NALAAPGSDS VTKPFSWAQQ QPVLSRMNSS SGYDQDGVME TYSSGGRGAS PRDIDMNQLP  120
STSDCDEAVL SSPSSIGMKR ERKKLNLLDP AHEQDRGWDL SSRGGSDDED GSGNTRKKLR  180
LSKEQSALLE ESFKDHSTLN PKQKNALAKE LNLRPRQVEV WFQNRRARTK LKQTEVDCEM  240
LKRYCENLTE ENRRLQKELQ ELRALKGSPP CASLYMPLPA ATLTMCPSCD HAQSSLIRGS  300
FHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174180TRKKLRL
2224232RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379713.11e-105homeobox-leucine zipper protein HAT4-like
SwissprotP466657e-63HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2K1KAR51e-104A0A2K1KAR5_PHYPA; Uncharacterized protein
TrEMBLA0A2R6WPH01e-104A0A2R6WPH0_MARPO; Uncharacterized protein
STRINGPP1S42_219V6.11e-105(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-61homeobox from Arabidopsis thaliana