PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0010s0147.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 360aa MW: 39226.1 Da PI: 7.2982 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.9e-18 | 215 | 269 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+ +++++ +++ LAk+l+L rqV vWFqNrRa+ k Sphfalx0010s0147.1.p 215 RKKLRLSKEQSALLEESFKDHSTLNPKQKSALAKQLNLRPRQVEVWFQNRRARTK 269 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 118.4 | 4e-38 | 215 | 304 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq++lLEesF+ +++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d e+L+r++++l+een+rL ke +eLr Sphfalx0010s0147.1.p 215 RKKLRLSKEQSALLEESFKDHSTLNPKQKSALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDREVLQRCCETLTEENRRLLKELQELR- 302 69*************************************************************************************9. PP HD-ZIP_I/II 90 el 91 ++ Sphfalx0010s0147.1.p 303 AI 304 44 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-18 | 197 | 269 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.13E-18 | 203 | 272 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 211 | 271 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.5E-16 | 213 | 275 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-15 | 215 | 269 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.54E-16 | 215 | 272 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 246 | 269 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.7E-8 | 271 | 304 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 5.2E-19 | 271 | 314 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 360 aa Download sequence Send to blast |
MLLAEGKERF KEDLRTMRVM SAAEDSVVGT ARSLGLNVMD LGVMMVQQRG GYEMNSSSSS 60 APPARQCPVQ LDLLPGLRPA SVTPAAAPSS TNNTFSWQPA PLRNGSRTNS GSGYDDGEVE 120 TFSSGGGGGH TGVSSPARGG GIDMNQLPST TECDEEAVMS SSPSSCIGMK REREKNMLQQ 180 HDQLFEQLLD RERACDLSSR GCSDDEDGGG GGTTRKKLRL SKEQSALLEE SFKDHSTLNP 240 KQKSALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDREVL QRCCETLTEE NRRLLKELQE 300 LRAIKVAAPC VIAHDYYMPL PAATLTMCPS CERVATVDNR SVTFSKPGYS HFSQSPAAC* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 213 | 219 | TRKKLRL |
2 | 263 | 271 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024379716.1 | 1e-126 | homeobox-leucine zipper protein HAT4-like | ||||
Swissprot | A2YW03 | 3e-65 | HOX27_ORYSI; Homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | A0A2R6WPH0 | 1e-131 | A0A2R6WPH0_MARPO; Uncharacterized protein | ||||
STRING | PP1S42_217V6.1 | 1e-125 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-56 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0010s0147.1.p |