PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0010s0076.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C3H | ||||||||
Protein Properties | Length: 392aa MW: 41043.3 Da PI: 8.0507 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.6 | 1.6e-06 | 55 | 77 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +Cr++ C+yG++C+F Hgp Sphfalx0010s0076.1.p 55 ECRRYNSPEGCPYGSKCRFKHGP 77 6999999999***********96 PP | |||||||
2 | zf-CCCH | 17.6 | 6.7e-06 | 93 | 116 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 kt++C f+ t C+yG+ C+F H Sphfalx0010s0076.1.p 93 KTKPCTKFFSTSGCPYGEGCHFLH 116 9*********************** PP | |||||||
3 | zf-CCCH | 29.4 | 1.3e-09 | 177 | 203 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f C++GdrC+FaHg+ Sphfalx0010s0076.1.p 177 FKTRLCNRFNTPEGCRFGDRCHFAHGE 203 79***********************96 PP | |||||||
4 | zf-CCCH | 30.6 | 5.7e-10 | 356 | 380 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC ++ + GtC + drC+FaHg Sphfalx0010s0076.1.p 356 FKTKLCENYIQ-GTCTFADRCHFAHG 380 69*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.972 | 50 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.62 | 50 | 77 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-5 | 53 | 79 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-4 | 55 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-6 | 56 | 80 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.94E-7 | 91 | 117 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.465 | 91 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.63 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-9 | 93 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 2.4 | 99 | 116 | No hit | No description |
PROSITE profile | PS50103 | 14.399 | 176 | 204 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0031 | 176 | 203 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-8 | 176 | 207 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-14 | 177 | 207 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-7 | 177 | 203 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 6.28E-13 | 259 | 332 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.3E-14 | 260 | 331 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.3E-11 | 260 | 330 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 15.2 | 261 | 325 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.79E-13 | 265 | 326 | No hit | No description |
Pfam | PF00013 | 6.5E-10 | 266 | 326 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-14 | 353 | 386 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.83E-8 | 354 | 385 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.14 | 355 | 382 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-7 | 355 | 381 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-6 | 356 | 380 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MGSYEPALKK ARPYEAGSTT LIAAMNGNGV AALNGGTTTA LDLQAMSMQL NGDQECRRYN 60 SPEGCPYGSK CRFKHGPTDD RDLGQPVSAL GSKTKPCTKF FSTSGCPYGE GCHFLHYVPG 120 GIAALGLMPV SASAGTTCLY SATSGGGGGR KGMGVTGVSA GLLACTTTDP ATTVGGFKTR 180 LCNRFNTPEG CRFGDRCHFA HGESDLRASN GISCLYSNGL EYMASAEGYM TGTLMTSPVA 240 SAIYYGEPTP PGVTATTFGA TTNTKIGIEA VFAGAIIGKA GANVKQISRL TGAKLSIREH 300 ETDINMRNVE MEGTYEQIER ASEMVHQFLQ QRTEVAPQRA AAAAAAAAAA LGSHNFKTKL 360 CENYIQGTCT FADRCHFAHG VHELRSTNLL R* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024396650.1 | 1e-161 | zinc finger CCCH domain-containing protein 14-like isoform X3 | ||||
TrEMBL | A0A2K1JEE5 | 1e-160 | A0A2K1JEE5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S66_196V6.1 | 1e-161 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-35 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0010s0076.1.p |