PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0010s0033.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | LBD | ||||||||
Protein Properties | Length: 258aa MW: 28366 Da PI: 7.1682 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.5 | 5.2e-39 | 6 | 107 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkC+++C++apyf a+q +++fa+vhk+FGasnv kll ++p +r da+ ++ yeA+ar++dPvyG+v++i++lqqq++ Sphfalx0010s0033.1.p 6 PCGACKFLRRKCVRGCIFAPYFGADQgAARFAAVHKIFGASNVAKLLMHIPMPRRCDAVLTISYEAQARLSDPVYGCVATIFALQQQVA 94 7***********************9989************************************************************* PP DUF260 89 qlkaelallkeel 101 +l+ael++++++l Sphfalx0010s0033.1.p 95 SLQAELDMVQAQL 107 ********99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.074 | 5 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.1E-38 | 6 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MSSGAPCGAC KFLRRKCVRG CIFAPYFGAD QGAARFAAVH KIFGASNVAK LLMHIPMPRR 60 CDAVLTISYE AQARLSDPVY GCVATIFALQ QQVASLQAEL DMVQAQLADR HAAAAAHQLQ 120 QQQQHQQQQQ QQQMGGLSFS PGQAHDYMQQ QFDQSSELNM QQPGPTSALS MSLASSSDSA 180 HNYLRIKEEE TRPYHAGMQQ HDFQYGIMLS NPLEPMPHQA LIDSMERPRS GALSDHQPAD 240 HDGELQALAH SLLRRPK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-37 | 3 | 107 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-37 | 3 | 107 | 8 | 111 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390481.1 | 3e-86 | uncharacterized protein LOC112289471 | ||||
TrEMBL | A0A2K1JQK5 | 4e-87 | A0A2K1JQK5_PHYPA; Uncharacterized protein (Fragment) | ||||
STRING | PP1S261_2V6.1 | 1e-87 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 4e-58 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0010s0033.1.p |