PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0010s0016.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C2H2 | ||||||||
Protein Properties | Length: 719aa MW: 81848.7 Da PI: 4.8021 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.3e-05 | 688 | 708 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C+ Cg+ F ++s+L +Hi Sphfalx0010s0016.2.p 688 HTCQTCGQDFESRSQLFKHIT 708 79*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00271 | 2.4E-20 | 10 | 75 | IPR001623 | DnaJ domain |
Gene3D | G3DSA:1.10.287.110 | 1.3E-22 | 10 | 97 | IPR001623 | DnaJ domain |
CDD | cd06257 | 4.56E-15 | 11 | 72 | IPR001623 | DnaJ domain |
SuperFamily | SSF46565 | 1.11E-22 | 11 | 124 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 18.197 | 11 | 83 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 3.4E-19 | 12 | 80 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.3E-14 | 13 | 31 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.3E-14 | 31 | 46 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.3E-14 | 55 | 75 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 60 | 79 | IPR018253 | DnaJ domain, conserved site |
PRINTS | PR00625 | 1.3E-14 | 75 | 94 | IPR001623 | DnaJ domain |
SuperFamily | SSF57667 | 1.93E-11 | 311 | 363 | No hit | No description |
PROSITE profile | PS50157 | 9.619 | 317 | 346 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 317 | 341 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 2.6E-7 | 318 | 341 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 319 | 341 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.325 | 688 | 717 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 688 | 712 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 690 | 712 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 719 aa Download sequence Send to blast |
MTPPVQGLQE CLYDVLAVER TATPDALKIA YRKQAMKWHP DKIQQSGANP EAYQEATVRF 60 QLISRAYEVL SDPVERAWYD SHRSAILSSA SSSSNAAPGE FEFNVWPYFS PTAFSGFGET 120 GKGFYAVYGE VFRKVHLQEQ MFARVYGTGS VREAPDLGGP GTLYANVTVF YNYWQGFTTE 180 KDFGWCDEYD VMQAPNRKVR RLMEEENKKI RKRERREYSD SVRQLAAFVK KRDKRVREKQ 240 LELQRIQKEK AEMRKQRQLQ LEKEKQEQVR RYKEQDWTKP SEDDYSDESE DDGFLEDDWD 300 RAGKNKEIPK EDDSEEFHCI ICGKHFRSAK QWKNHEQSKK HIGRVSALKD AFMEDDEQVE 360 MLGRHLGVEV PAARQEREAM SEIDNRQTTI GADSEEEVDD ICELDSDPSS NFQQDDTGQN 420 GPEVVDLERS HPQSDSVDEE NDSNEDDEDS MLAAMLKSHL RQNTATNVST ERSESGTANG 480 SIEIEEFTEH FSPPPSHNDT GHCSNEDGEK DENDDEHEDS ILAAMLSSQK NKQKAVAADR 540 VEIVSSVEDG DTHKDNETNN FEEAGVSVSQ DEFTVKDSYP NKEVGESVGK GKARRRAKQE 600 KKQAAVFDRH AATAAELASK EQMQGEVLDN DSKVDRKDDL PPTEVSNAEQ GWEESMRLKE 660 IAQQNRSKLS QRGKKMKKGK GEAKQYAHTC QTCGQDFESR SQLFKHITAT NHAVLKSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2dmx_A | 6e-14 | 13 | 80 | 12 | 73 | DnaJ homolog subfamily B member 8 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 207 | 215 | KKIRKRERR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024375541.1 | 0.0 | DNAJ protein JJJ1 homolog isoform X1 | ||||
TrEMBL | A0A2K1KIA0 | 0.0 | A0A2K1KIA0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S72_296V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74250.1 | 3e-77 | DNAJ heat shock N-terminal domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0010s0016.2.p |