PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0009s0039.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 586aa    MW: 62906.7 Da    PI: 5.9103
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0009s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08390437455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++Y++sLq
  Sphfalx0009s0039.1.p 390 SHSLAERVRREKIGERMKFLQDLVPGC----NKVTGKAMMLDEIINYVQSLQ 437
                           8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-17384454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.72E-10384441No hitNo description
PROSITE profilePS5088815.345386436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16386453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-6390437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-9392442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MDSDGLHFAT TSMCRSMIPV SDTSSMSQTV SHAEEAGAMR MQEFMIGRQQ GINHGVPPPL  60
LGTTSSYATS RQQRLGSSGP LMANKVAGSA SSGVLALQGT GTAGGMATSD HCSSLAQFSS  120
DPGFAERAAK FSSFSNGGNY YSLTPYALAP DHRCKPRGSR SIAAGDNNNN DGKLSRSSSC  180
SRLANLAPSS CITTERMAPG SADSKSPEIN KAYQLKDEST AMEYDGKKQQ QQQPGGVVGG  240
GGNIALTEAF EGATEIDGGS DPNDTDEADG LEYSSCYQQA YGDRIEKGKK LLQQADKGFH  300
REPGGDSILV SSGGREGQAA VDGDEIKAKR QRSWESTKED VKLRPDRACS ESYSGGDSSP  360
LSMKESCKPS ELPKQDYIHV RARRGQATDS HSLAERVRRE KIGERMKFLQ DLVPGCNKVT  420
GKAMMLDEII NYVQSLQRQV EFLSMKLASV NPRLDFDVEN FLAKEQMQSH ASTTMMMGPN  480
PTAMLYGHHQ QPQQHQAHNL QSFEPSGLDF TPAKSASEAC IRRTMSAPVA APWSCSDAFA  540
DNLSQLSSKW EGELQSVDIK LSDPDGNSTV DETGQIPATH MKSEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326331KAKRQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.15e-53cryptochrome-interacting basic-helix-loop-helix 1