PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0009s0011.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 823aa    MW: 90041.4 Da    PI: 6.2491
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0009s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.81.4e-21120175156
                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +++ +++t+ q++e+e lF+++++p+ ++r++L+k+lgL+ rqVk+WFqNrR+++k
  Sphfalx0009s0011.1.p 120 KKRYHRHTPRQIQEMEMLFKECPHPDDKQRQHLSKELGLEPRQVKFWFQNRRTQMK 175
                           688999***********************************************998 PP
2START214.15.1e-673265511206
                           HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS
                 START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla. 77 
                           ela +a++el+ +a+a+ep+W   +      e++n+de++++f+++ +      ++ea r++g+v  +++ lve+l+d++ qW e ++ 
  Sphfalx0009s0011.1.p 326 ELAVTAMEELLGMAQANEPLWLPGPdhggklEQLNYDEYMRQFPRGIGlrphgLKTEATRETGMVMNDAVSLVETLMDSS-QWMEVFPc 413
                           57899****************************************999********************************.******** PP

                           ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEE CS
                 START  78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliep 156
                              +a t++v+s+g      galqlm+aelq+lsplvp R+ +f+Ry++q+ +g+w++vdvSvds +++p  +s++R++++pSg+li++
  Sphfalx0009s0011.1.p 414 mvsRALTVDVLSTGvngnrnGALQLMYAELQVLSPLVPtREIYFLRYCKQHAEGVWAVVDVSVDSLRDNP-PPSLMRCRRRPSGMLIQD 501
                           **********************************************************************.7***************** PP

                           ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                 START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                           ++ng+skvt+veh+++++r +h ++r lv+sg+a+ga++wva lqrqce+
  Sphfalx0009s0011.1.p 502 TPNGYSKVTVVEHMEYDDRAVHRMYRDLVNSGMAFGAQRWVAVLQRQCER 551
                           ************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.18E-20103177IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-22104171IPR009057Homeodomain-like
PROSITE profilePS5007117.119117177IPR001356Homeobox domain
SMARTSM003892.5E-20118181IPR001356Homeobox domain
CDDcd000861.02E-19119177No hitNo description
PfamPF000464.3E-19120175IPR001356Homeobox domain
PROSITE patternPS000270152175IPR017970Homeobox, conserved site
PROSITE profilePS5084846.313317554IPR002913START domain
SuperFamilySSF559611.51E-37318553No hitNo description
CDDcd088758.94E-132321550No hitNo description
SMARTSM002349.4E-59326551IPR002913START domain
PfamPF018522.4E-57327551IPR002913START domain
Gene3DG3DSA:3.30.530.208.9E-6396549IPR023393START-like domain
SuperFamilySSF559612.13E-24576746No hitNo description
SuperFamilySSF559612.13E-24774814No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MRLGGVTVQV NGNGTLGRGG FADQLGGMHA GVMAPPRPVP PLLTLPRPGA KQIYSTSPSL  60
SLGPPLGLEA AVGQREISQT AESEQQQQKN KEEEYESRSG SDNMEGGSGD DQDPDHPPRK  120
KRYHRHTPRQ IQEMEMLFKE CPHPDDKQRQ HLSKELGLEP RQVKFWFQNR RTQMKAQTER  180
AENSLLRQDN DKLRSENILM REALKNPTCQ HCGGPATIEM SLDEQQLRIE NCRLKDELDR  240
VSSLAAKYLG RPIPTHVPSL TTTPFAPLPL PSSSLDLQVG GSSFGQLHPS PPPGCAMDIV  300
AQGPSVVDVA TRPGGLTEAE KPLVVELAVT AMEELLGMAQ ANEPLWLPGP DHGGKLEQLN  360
YDEYMRQFPR GIGLRPHGLK TEATRETGMV MNDAVSLVET LMDSSQWMEV FPCMVSRALT  420
VDVLSTGVNG NRNGALQLMY AELQVLSPLV PTREIYFLRY CKQHAEGVWA VVDVSVDSLR  480
DNPPPSLMRC RRRPSGMLIQ DTPNGYSKVT VVEHMEYDDR AVHRMYRDLV NSGMAFGAQR  540
WVAVLQRQCE RLASLLATNI DLGGVPSADG RRSMLKLAQR MTNNFCAGVS ASTVHTWTTL  600
SGSGDDDVRV MTRKSVDNPG EPHGIVLSAA TSLWLPVSPQ RVFEFLRDER LRSEWDILSN  660
GGLVTEMAHI AKGQDPGNSV SLLRVNPMNA NQSNMLILQE SCTDVSGALL IYAPVDIPAM  720
NLVLRGGDPA YVALLPSGFA ILPDGPENRS RASSMMVSHD STGQLTDSSP RTTGGSLLTV  780
AFQILVSTIP SARLSLESVE TVNNLISCTV QRIKAALRCE DA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394838.10.0homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_024394839.10.0homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLQ147S40.0Q147S4_PHYPA; Class IV HD-Zip protein HDZ43
STRINGPP1S209_10V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]