PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0008s0253.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 809aa    MW: 88705.9 Da    PI: 6.4703
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0008s0253.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.3e-21112167156
                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +++ +++t+ q++e+e +F+++++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k
  Sphfalx0008s0253.1.p 112 KKRYHRHTPRQIQEMEMMFKECPHPDDKQRQHLSRELGLEPRQVKFWFQNRRTQMK 167
                           688999***********************************************998 PP
2START212.91.1e-663075301206
                           HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
                 START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                           ela +a++el+++a+a++p+W+  +    e++n+de++ +f+++ +      ++ea r++g+v  + + lve l+d++ qW+e+++   
  Sphfalx0008s0253.1.p 307 ELAVTAMEELLRMAQADKPLWMPGPdggkEQLNYDEYVHQFPRGIGlrphgLQTEATRETGMVMNNGVSLVEMLMDSS-QWTEMFPcmv 394
                           57899**************************************999********************************.********** PP

                           .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEEC CS
                 START  78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepks 158
                            +a t+ev+s+g      galqlm++elq+lsplvp R+ +f+Ry++q+ +g+w++vdvSvds +++p  +s++R++++pSg+li++++
  Sphfalx0008s0253.1.p 395 sRAFTVEVLSTGvngnrnGALQLMYSELQVLSPLVPtRELYFLRYCKQHAEGVWAVVDVSVDSLRDNP-PPSLMRCRRRPSGMLIQDTG 482
                           ********************************************************************.7******************* PP

                           TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                 START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                           ng+skvt veh+++++r +h ++r lv+sg+a+ga++w a lqrqce+
  Sphfalx0008s0253.1.p 483 NGYSKVTAVEHMEYDDRAVHRIYRDLVNSGMAFGAQRWIAILQRQCER 530
                           **********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.63E-2095169IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-2295163IPR009057Homeodomain-like
PROSITE profilePS5007117.167109169IPR001356Homeobox domain
SMARTSM003891.9E-20110173IPR001356Homeobox domain
CDDcd000861.54E-19111169No hitNo description
PfamPF000467.1E-19112167IPR001356Homeobox domain
PROSITE patternPS000270144167IPR017970Homeobox, conserved site
PROSITE profilePS5084847.269298533IPR002913START domain
SuperFamilySSF559616.46E-38299532No hitNo description
CDDcd088751.54E-129302529No hitNo description
SMARTSM002343.1E-59307530IPR002913START domain
PfamPF018523.9E-57308530IPR002913START domain
Gene3DG3DSA:3.30.530.206.4E-5395527IPR023393START-like domain
SuperFamilySSF559613.71E-23558728No hitNo description
SuperFamilySSF559613.71E-23760800No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MRLGGATVQV TGNGIFGRGG YAELGGMPAG LMAPPRPVPP LALQRPGKNY SSPNLSLGPP  60
MGLDGQREIS HTADSQQQQQ KNKDEEYESR SGSDNMEGGS GDDQDPDQPP RKKRYHRHTP  120
RQIQEMEMMF KECPHPDDKQ RQHLSRELGL EPRQVKFWFQ NRRTQMKAQT ERAENTLLRQ  180
ENEKLRSENI LMREALKNPS CQHCGGPATI GEMSLDEQQL RIENVRLKEE LDRVSALAAK  240
YLGRPIPPPP HVPFLLPSSS LDLQVGGSNF GLLPSPGSMD IVQGPSVADV ATRPGGLTEA  300
EKPMVVELAV TAMEELLRMA QADKPLWMPG PDGGKEQLNY DEYVHQFPRG IGLRPHGLQT  360
EATRETGMVM NNGVSLVEML MDSSQWTEMF PCMVSRAFTV EVLSTGVNGN RNGALQLMYS  420
ELQVLSPLVP TRELYFLRYC KQHAEGVWAV VDVSVDSLRD NPPPSLMRCR RRPSGMLIQD  480
TGNGYSKVTA VEHMEYDDRA VHRIYRDLVN SGMAFGAQRW IAILQRQCER LASLLASNIP  540
TRDLGGVPSA DGRRSMLKLA QRMTNNFCAG VSASTVHTWT TLSGTGEDDV RVMTRKSVDN  600
PGEPHGIVLS AATSLWLPVA PQRVFEFLRD ERLRSEWDIL SNGGLVAEMA HIAKGQDPGN  660
SVSLLRVNPL NSSQSNMLIL QESCTDVSGA LVIYAPVDIP AMNLVLRGGD PAYVALLPSG  720
FAILPDGPEN RRAMLVPPSQ HDSCSSGQLT DPSPHTTTTG GSLLTVAFQI LVSTVPSAKL  780
SLESVATVNN LISSTVQRIK TALRCEDV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394838.10.0homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_024394839.10.0homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLQ147S40.0Q147S4_PHYPA; Class IV HD-Zip protein HDZ43
STRINGPP1S209_10V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]