PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0008s0251.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 814aa    MW: 89302.5 Da    PI: 6.4274
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0008s0251.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.9e-21117172156
                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +++ +++t+ q++e+e +F+++++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k
  Sphfalx0008s0251.1.p 117 KKRYHRHTQRQIQEMEMMFKECPHPDDKQRQHLSRELGLEPRQVKFWFQNRRTQMK 172
                           688999***********************************************998 PP
2START212.91.2e-663125351206
                           HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
                 START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                           ela +a++el+++a+a++p+W+  +    e++n+de++ +f+++ +      ++ea r++g+v  + + lve l+d++ qW+e+++   
  Sphfalx0008s0251.1.p 312 ELAVTAMEELLRMAQADKPLWMPGPdggkEQLNYDEYVHQFPRGIGlrphgLQTEATRETGMVMNNGVSLVEMLMDSS-QWTEMFPcmv 399
                           57899**************************************999********************************.********** PP

                           .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEEC CS
                 START  78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepks 158
                            +a t+ev+s+g      galqlm++elq+lsplvp R+ +f+Ry++q+ +g+w++vdvSvds +++p  +s++R++++pSg+li++++
  Sphfalx0008s0251.1.p 400 sRAFTVEVLSTGvngnrnGALQLMYSELQVLSPLVPtRELYFLRYCKQHAEGVWAVVDVSVDSLRDNP-PPSLMRCRRRPSGMLIQDTG 487
                           ********************************************************************.7******************* PP

                           TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                 START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                           ng+skvt veh+++++r +h ++r lv+sg+a+ga++w a lqrqce+
  Sphfalx0008s0251.1.p 488 NGYSKVTAVEHMECDDRAVHRIYRDLVNSGMAFGAQRWIAILQRQCER 535
                           **********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.97E-20100174IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-22104175IPR009057Homeodomain-like
PROSITE profilePS5007117.184114174IPR001356Homeobox domain
SMARTSM003891.1E-19115178IPR001356Homeobox domain
CDDcd000862.61E-19116174No hitNo description
PfamPF000461.6E-18117172IPR001356Homeobox domain
PROSITE patternPS000270149172IPR017970Homeobox, conserved site
PROSITE profilePS5084846.73303538IPR002913START domain
SuperFamilySSF559611.79E-37304537No hitNo description
CDDcd088751.32E-128307534No hitNo description
SMARTSM002342.1E-59312535IPR002913START domain
PfamPF018522.2E-56313535IPR002913START domain
Gene3DG3DSA:3.30.530.208.3E-5400533IPR023393START-like domain
SuperFamilySSF559613.98E-23563733No hitNo description
SuperFamilySSF559613.98E-23765805No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MRLGGASVQV TGNAIFGRGG FAELGGMPAG LMAPPRPVPP LAMQRPGKNY SSPNLSLAPP  60
MGLEGQREIS QSAESHQQQQ QQQQQKNKEE EYESRSGSDN MEGGSGDDQD PDQPPRKKRY  120
HRHTQRQIQE MEMMFKECPH PDDKQRQHLS RELGLEPRQV KFWFQNRRTQ MKAQTERAEN  180
TLLRQENEKL RSENILMREA LKNPSCQHCG GPATIGEMSL DEQQLRIENV RLKEELDRVS  240
ALAAKYLGRP IPPPPHVPFL LPSSSLDLQV GGSNFGLLPS PGSMDIVQGP SVADVATRPG  300
GLTEAEKPMV VELAVTAMEE LLRMAQADKP LWMPGPDGGK EQLNYDEYVH QFPRGIGLRP  360
HGLQTEATRE TGMVMNNGVS LVEMLMDSSQ WTEMFPCMVS RAFTVEVLST GVNGNRNGAL  420
QLMYSELQVL SPLVPTRELY FLRYCKQHAE GVWAVVDVSV DSLRDNPPPS LMRCRRRPSG  480
MLIQDTGNGY SKVTAVEHME CDDRAVHRIY RDLVNSGMAF GAQRWIAILQ RQCERLASLL  540
ASNIPTRDLG GVPSADGRRS MLKLAQRMTN NFCAGVSAST VHTWTTLSGT GEDDVRVMTR  600
KSVDNPGEPH GIVLSAATSM WLPVAPQRVF EFLRDERLRS EWDILSNGGL VAEMAHIAKG  660
QDPGNSVSLL RVNPLNSSQS NMLILQESCT DVSGALVIYA PVDIPAMNLV LRGGDPAYVA  720
LLPSGFAILP DGPENRRAML VPPSQHDSCS SGQLTDPSPH TTTTGGSLLT VAFQILVSTV  780
PSAKLSLESV ATVNNLISST VQRIKAALHC EDA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394838.10.0homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_024394839.10.0homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLQ147S40.0Q147S4_PHYPA; Class IV HD-Zip protein HDZ43
STRINGPP1S209_10V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]