PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0008s0232.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | GRAS | ||||||||
Protein Properties | Length: 757aa MW: 81286.3 Da PI: 6.3588 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 464.9 | 4.5e-142 | 383 | 755 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 l++lL++cAeav+++d+++a+ ++a+l++++s +gdpmqRlaay++e+L ar+++s+ +lykal+++ ++ + l+a++++++v+P Sphfalx0008s0232.1.p 383 LERLLVTCAEAVAENDFQKANVVIAKLNHMVSIHGDPMQRLAAYMLEGLVARMVSSGGGLYKALKCKVAPAAGGGDLLSAMQVLYDVCP 471 5789******************************************************************999**************** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176 ++kf++++aN aI ea+++e+rvHiiDf+i+qG+QW +L+qaLa+Rp+gpp+lRiTgv++p+s+ l+ +g+rL+k+A+++gvpf Sphfalx0008s0232.1.p 472 YFKFGYMAANGAIAEAFQNEDRVHIIDFEINQGVQWSTLIQALAARPGGPPHLRITGVDDPSSEmtPPGGLKLVGNRLRKLAQSVGVPF 560 **************************************************************9999999******************** PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 f++ v+k++ +++ ++L+ ++gEalaVn++lqlh+++desv+++++rd++L++vksl Pkvv++veqea++n+++Fl rf+ea++yys Sphfalx0008s0232.1.p 561 VFHA-VEKKCPEVQAWMLERQHGEALAVNFALQLHHVPDESVCTTNPRDRMLQMVKSLGPKVVTLVEQEANTNTAPFLPRFIEAMKYYS 648 ****.7*********************************************************************************** PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 a+f sl+++l+r+s+eri+vE+++l+r++vnv+acegaer+erhe l+kWr+r+++aGF+p +ls ++++++k+ll+ +++ yr++ e Sphfalx0008s0232.1.p 649 AVFQSLDVTLGRDSRERINVEQQCLARDLVNVIACEGAERVERHEMLGKWRARMSMAGFRPHSLSASVNNTIKMLLEAYSD-KYRLQVE 736 ********************************************************************************5.5****** PP GRAS 355 sgslvlgWkdrpLvsvSaW 373 g+l lgW++r+L+++SaW Sphfalx0008s0232.1.p 737 GGALSLGWMNRSLIVASAW 755 ******************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 70.728 | 357 | 737 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-139 | 383 | 755 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 757 aa Download sequence Send to blast |
MMQYRPELGS IGLTLRYPSA SQSRDHRDYF TDTANSQQTA SYYTSCSSTN TTRQAFEDNN 60 QRTSHFVACN TSYASLKPSR DQSSPVSTLS PPDVSTTATT TTTGAFDQAA AASASFQRGG 120 WSSASYQSEG SSGSEASLAS LESQEADFHG RGAFHRGAGD HQQRPAILRS AAASVCGPVP 180 SYQMQQQATS FHEARNIHMS FAAAKQQLYV QQTAAAMGVG GAGRFAAAGG SAAGAEMSGE 240 VVQMLQVLES ALLDDDEDDD MNGSFHQGAA GSSGGADHHM SVSEAGSSWA DAFVDILGAE 300 SCCTQQPLDQ LKATAMEMQQ PSVMSSSCGT AAGLQQQSAY AKQCQKPTKA VVGYAGDHAS 360 KLTAMTEPAQ QLPVKSLLET SQLERLLVTC AEAVAENDFQ KANVVIAKLN HMVSIHGDPM 420 QRLAAYMLEG LVARMVSSGG GLYKALKCKV APAAGGGDLL SAMQVLYDVC PYFKFGYMAA 480 NGAIAEAFQN EDRVHIIDFE INQGVQWSTL IQALAARPGG PPHLRITGVD DPSSEMTPPG 540 GLKLVGNRLR KLAQSVGVPF VFHAVEKKCP EVQAWMLERQ HGEALAVNFA LQLHHVPDES 600 VCTTNPRDRM LQMVKSLGPK VVTLVEQEAN TNTAPFLPRF IEAMKYYSAV FQSLDVTLGR 660 DSRERINVEQ QCLARDLVNV IACEGAERVE RHEMLGKWRA RMSMAGFRPH SLSASVNNTI 720 KMLLEAYSDK YRLQVEGGAL SLGWMNRSLI VASAWH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-73 | 390 | 755 | 26 | 378 | Protein SCARECROW |
5b3h_A | 3e-73 | 390 | 755 | 25 | 377 | Protein SCARECROW |
5b3h_D | 3e-73 | 390 | 755 | 25 | 377 | Protein SCARECROW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024379851.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024379861.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024379870.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024379876.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024379885.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024379891.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024379899.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A2K1L6M1 | 0.0 | A0A2K1L6M1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S346_13V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-166 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0008s0232.1.p |