PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0008s0216.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C2H2 | ||||||||
Protein Properties | Length: 406aa MW: 46115.2 Da PI: 5.7767 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00041 | 102 | 124 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F+ L++H+ +H Sphfalx0008s0216.1.p 102 CSfeGCGKVFTEIAALRKHLHVH 124 88889***************988 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.00059 | 129 | 153 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + C+ Cgk F ++s LkrH +H Sphfalx0008s0216.1.p 129 FMCHhkGCGKGFMDSSKLKRHFLSH 153 78*******************9888 PP | |||||||
3 | zf-C2H2 | 23.1 | 1.9e-07 | 159 | 183 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nL++H+rtH Sphfalx0008s0216.1.p 159 FVCPleGCGKAFSLDFNLRSHMRTH 183 89**********************9 PP | |||||||
4 | zf-C2H2 | 18.6 | 5.2e-06 | 189 | 214 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp dCgk++ + + L+ Hir+ H Sphfalx0008s0216.1.p 189 HACPfeDCGKRYAHEYKLRAHIRSyH 214 679********************999 PP | |||||||
5 | zf-C2H2 | 12 | 0.00066 | 253 | 278 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp C+k++ + + L+ H+r+ H Sphfalx0008s0216.1.p 253 FACPhaGCTKRYIHEYKLNLHLRNsH 278 78*********************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.0E-12 | 97 | 126 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0015 | 100 | 124 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.365 | 100 | 129 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.04E-7 | 100 | 153 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 102 | 124 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.5E-11 | 127 | 149 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.051 | 129 | 153 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.651 | 129 | 158 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 131 | 153 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.52E-16 | 140 | 192 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.6E-22 | 150 | 181 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 14.794 | 159 | 188 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.7E-4 | 159 | 183 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 161 | 183 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.2E-14 | 182 | 213 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.45E-6 | 183 | 216 | No hit | No description |
SMART | SM00355 | 0.0085 | 189 | 214 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.572 | 189 | 219 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 191 | 214 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.1E-8 | 249 | 274 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.016 | 253 | 278 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.536 | 253 | 283 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 255 | 278 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MRIPEEDPKE YGEEGDVMIT GLLKSDVYNI LDNNSVIGLA ESNPPRRRWL KHWVPQDTVL 60 NPGKLRTLKW IPGDAIPELN DLKVSEEEEH EPEEEYESVY LCSFEGCGKV FTEIAALRKH 120 LHVHGEKQFM CHHKGCGKGF MDSSKLKRHF LSHTGERQFV CPLEGCGKAF SLDFNLRSHM 180 RTHTGEKYHA CPFEDCGKRY AHEYKLRAHI RSYHDKNQPE TTPPLQVERE REVVTPKPVA 240 PSRPDMSASE RPFACPHAGC TKRYIHEYKL NLHLRNSHLD EELETEQLQH EKQGSDDNEE 300 EVAGGSDEEP PPVKATARSS GKGKLCVSSK SSASKAKRKR PTGSAQTVPS TIKVPIGTKP 360 LKRQYQDDSE ETEDEDGEDN DNDHWRGMQR PIAVQDDEET EDDVD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 5e-35 | 99 | 213 | 8 | 121 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024379566.1 | 1e-105 | zinc finger transcription factor YY1-like | ||||
TrEMBL | A0A2R6WFZ9 | 1e-114 | A0A2R6WFZ9_MARPO; Uncharacterized protein | ||||
STRING | PP1S42_134V6.1 | 9e-95 | (Physcomitrella patens) | ||||
STRING | EFJ20676 | 9e-96 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.1 | 5e-87 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0008s0216.1.p |