PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0008s0215.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 339aa    MW: 36967.5 Da    PI: 9.3869
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0008s0215.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.5e-13164208347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  Sphfalx0008s0215.1.p 164 PWTEEEHRLFLLGLTKFGKGDWRSISRNFVISRTPTQVASHAQKY 208
                           7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.948156213IPR017930Myb domain
SuperFamilySSF466891.64E-16159214IPR009057Homeodomain-like
SMARTSM007172.5E-10161211IPR001005SANT/Myb domain
TIGRFAMsTIGR015578.9E-17161211IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.7E-11162207IPR009057Homeodomain-like
PfamPF002491.3E-10164208IPR001005SANT/Myb domain
CDDcd001671.38E-9164209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAAPSSGQPR LAMVSPLSSL PAPFQFSSSS SQHFHTWTRQ DNDDLLFQNS LAVHEEHEAP  60
NHWETDVAVL IPPANPIAAY VKRHFEILQE DNVSREASGR ILMPSYTAVA SPSTSDDVPS  120
LGQSGFQEGR VSSREASGLL GSPSLVRPGV TPKSADQERR KGIPWTEEEH RLFLLGLTKF  180
GKGDWRSISR NFVISRTPTQ VASHAQKYFI RLNSINKDKR RSSIHDITSV NNYGQQMLQP  240
SHGTIITGRG GLAPASGQQP LSNPVQQGSI QHGMEYGPQM GHQPALGTAG MRSALDPVPF  300
GPNKGHMQQP TVTQGTTLLS MQQHIDMART MQPPAMHH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366442.13e-70transcription factor SRM1-like
RefseqXP_024366443.13e-70transcription factor SRM1-like
SwissprotQ9FNN63e-52SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2K1IC538e-69A0A2K1IC53_PHYPA; Uncharacterized protein
STRINGPP1S256_11V6.11e-69(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-43MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]