PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0008s0163.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 890aa    MW: 95666.9 Da    PI: 8.2201
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0008s0163.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.64.8e-30272356187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW+++e+laLi++r em++++r++ lk+plWe+vs+k+ + g++rs+k+Ckek+en++k+ykk+k+g+ +r  ++ +++++f++lea
  Sphfalx0008s0163.1.p 272 RWPRRETLALIKIRAEMDSNFRDSGLKGPLWEDVSRKLGDLGYQRSAKKCKEKFENIHKYYKKTKDGRAGR--QDGKNYRFFSELEA 356
                           8********************************************************************97..66678******985 PP
2trihelix105.73.1e-33662746186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           rW+k ev +Li++r+ me+r++++  k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++k+r +e+ +tcpyf+ql+
  Sphfalx0008s0163.1.p 662 RWPKPEVNDLIRLRSGMETRFQEAGPKAPLWEEISSGMSRLGYNRNAKRCKEKWENINKYFKKTKESNKQR-PENAKTCPYFHQLD 746
                           8*********************************************************************8.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0051269331IPR001005SANT/Myb domain
PROSITE profilePS500906.609271329IPR017877Myb-like domain
PfamPF138372.8E-20271357No hitNo description
CDDcd122034.57E-31271336No hitNo description
PROSITE profilePS500906.969655719IPR017877Myb-like domain
SMARTSM007170.068659721IPR001005SANT/Myb domain
PfamPF138372.2E-21661747No hitNo description
CDDcd122031.00E-31661726No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MSESWSEDRG SPSTTPGAAP AHEWPGVVGF NKNMMQSSGG QYNHHAGVSD PPASQFVVGR  60
PPPPPPHNIF GLSPHDHHVS MSLQQSGPSV GGAHHVQVAA PHQHQGQSQQ HHHSALQQHL  120
QLSAHQGASL HSHNVRPQTS HQSTSPPPPP AVSYPAHHPS QHSQQQQQQQ QTQHGLQQPA  180
SQQPSQHQQQ QQQNAAQQQL VHQLGLASGP DSPDTAAAPS PPVAGSCRPS PASFSNKQIA  240
AVPGAARGVD VDEDQQLGMD DEESRGTGAG NRWPRRETLA LIKIRAEMDS NFRDSGLKGP  300
LWEDVSRKLG DLGYQRSAKK CKEKFENIHK YYKKTKDGRA GRQDGKNYRF FSELEAIYGG  360
GAGQHMSSSH APAAAAPQLQ HHVAGPDLHG SNAAAAAVLL MGTTPGGFHA APAAAAGLVD  420
GTPVSRIAAA QRTIADRTAE LSASGVTLTD SSEDDYEELT PVPAAVGGAG AAAAAGPENH  480
DSSSKKKRKR LDDHGKLLMM RSSSSSSKLK SLESVVKKLM DQQEVMQRKF LEAIERREQD  540
RMVREEASKR QEMARLTRDH ELRAQQHAVA ASRDAALVAF LQKIVVTTPT TALQLQQIRP  600
PAAAPLRLVA TPAAPAAVVR LPGVTTVVET THHDQSTHQA AETEHQQEKD QEAGSLDPNS  660
NRWPKPEVND LIRLRSGMET RFQEAGPKAP LWEEISSGMS RLGYNRNAKR CKEKWENINK  720
YFKKTKESNK QRPENAKTCP YFHQLDTLYR QGVLTPTSKA SNKLMLLGQQ SDQHLSHGSG  780
SDHHEQQLLD HHIPAIPTTL AAGEHADNAH VRQQQPDADQ VLSILPPAAT AAEGVATTAD  840
SGTNNGGGVT APEPAAHFFS SPGDNGSSVD RGAGPTPKKG VMQQQLTPR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402443.11e-180trihelix transcription factor GTL1-like
TrEMBLA0A2K1J0Q11e-178A0A2K1J0Q1_PHYPA; Uncharacterized protein
STRINGPP1S19_341V6.11e-179(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.23e-49Trihelix family protein